Sequence
atgc intronic sequence ATGC exonic sequenceGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatttgctttttcagaatatacatgtctaagctctgcaatattttccacatggttcttgaaaatagaacttttgaattgtactgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G017525_T01 (Zea mays), 5'ss of exon 4
GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatttgctttttcagaatatacatgtctaa------gctctgcaatattttccacatg---gttcttgaaaatagaacttttgaattgtactgtgcag----------
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GGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCAAGATCAGAAGCTCAACTGAAAgta--tacctttgctcttcatgctgctcatgactaccttttcacccagtcttaatttcaacctgccaggtattttccactgtctcttcgttatgacctgtatcaattaatgcag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 8
GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatttgctttttcagaatatacatgtctaagctctgcaatattttccacatggttcttgaaaatagaacttttgaattgtactgtgcag
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GGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAGTTAAAAgtaa-taatctgggttttcag--cccccatgtattagcttagggattacttctgcc--attactcaaggtaaaccttttacaattttcag-----
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 8
GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatttgctttttcagaatatacatgtctaagctctgcaatattttccacatggttcttgaaaatagaacttttgaattgtactgtgcag
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GGAGAGATGCAACAACTTCGGGACAAGCTTGCTATAACTGAGCGCACTGCAAAGTCTGAAGCACAGTTAAAAgtaa-taatctggtttttcag--cccccatgtattagcttaggag-attacttctgctgttactcaaggtaaaccttttacaattttcag-----
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 8
GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatttgctttttcagaatatacatgtctaagctctgcaatattttccacatggttcttgaaaatagaacttttgaattgtactgtgcag
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GGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaa-taatctggttctt----atctattgacttaggtgat----tagttctcccattattc----aaggtgaacttttaaatattttcag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719957|gb|FC067712.1|FC067712EST: ACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAA GAAAAATATCACCTGCGGCTCAAAGTTATTGAAGAGAGTTTGAGAGGATCT
genomic: ACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatt ... tactgtgcagGAAAAATATCACCTGCGGCTCAAAGTTATTGAAGAGAGTTTGAGAGGATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatttgctttttcagaatatacatgtctaagctctgcaatattttccacatggttcttgaaaatagaacttttgaattgtactgtgcag
- - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC