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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGTGATTGTGAATTCTGCAAGTATGCAGGTGCAGGCAGTGGTTAGAAAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctccaacttgtctaagtcctcatactgaaaatctgtcctttctaagaataattgttaatagttaaccatgcaacttctacatccag

Basic information

species Vitis vinifera
transcript Vv01s0011g04970.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45771618|gb|CN007470.1|CN007470
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|26263024|gb|CA814087.1|CA814087
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|110402864|gb|EC963654.1|EC963654
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|30328488|gb|CD011750.1|CD011750
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|110377427|gb|EC942492.1|EC942492
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|110360943|gb|EC924388.1|EC924388
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|71876936|gb|DT025991.1|DT025991
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|33402110|gb|CF207737.1|CF207737
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|110404868|gb|EC970393.1|EC970393
EST:     AGAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|30322175|gb|CD005437.1|CD005437
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|352774046|gb|FQ474569.1|FQ474569
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|110700562|gb|EE078742.1|EE078742
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|46918806|gb|CN548135.1|CN548135
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|30328811|gb|CD012073.1|CD012073
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTTTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
EST: gi|27579805|gb|CB002500.1|CB002500
EST:     AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAG                         GGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA
genomic: AAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGgttctctcca ... ctacatccagGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAA