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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04370.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 7
ATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctacc-ttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcag
||||||| | ||||||||  |||||||||||||||||||||||||||| || || || || ||  | |||||  |||||||||| |||||| ||||||||||    |  ||    ||         |  ||  || ||| |   ||  |    |   |||| ||   ||||||||     |                                                                        
ATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTGGTTTTGAGTTAATGGAGgtatactctttttgttgtggtcaaattcctgacttgtgctttccagactcaggttcctaatgtagagttgtatgtgctgcag-----------------------------------------------------------------------

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 7
ATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttct--tggtctgataatgtta-ttttgtgttttgcctcttaggttgtcatggttaatcta-ccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcag
 |||||| | ||||||||  | |||||||||||||||||||||||||| || || || || ||  | |||||| | |||||||| |||||  ||||||||||    |  |  || | || | |  | | | |||  || ||| |   |        |   |||| ||   ||  |||| |   |                                                                        
GTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTGGGTTTGAATTAATGGAGgtatactctttatgttgtggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcag-----------------------------------------------------------------------

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 10
ATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgac--tgtttgagttctataaagttaagttttatttgtcaatttcag
||||||| | |||||| |  ||||||||||||| ||||| ||| ||||||| ||||||||||| || |||||| | |||||||| |||||| |  ||||||| ||    |   |||||| |    | |  |  ||||  | | |||||     ||||||       | ||   || |  ||   |||  | ||||| ||   | |   |    |||||| ||   || | | |  | |   |||| |  |||||
ATTTGTTTTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTGGTTTTGAGTTGGTGGAGgtaagccctt--atctgattaatacactccg-attttttcacataggt----gtggtta--tgggttagtgcatccataaa---gcttgtttttcttttgatatatctatatcgtttgaattgcttaca-taacatctgtgttgtaatcttcag

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 8
ATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcag
||||||| | |||||| |  ||||||||||||| ||||| ||| ||||||| ||||| ||||| || |||||| | || ||||| |||||| |  ||||||| |  | | || |||||| |    | | ||  ||||  | | ||||| ||  | ||   |      || ||   |||   |    |  |  || || | |     |  || ||||| ||   || |    | | |   ||| ||  |||||
ATTTGTTCTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAACCCCTTCTTTGGGTGTTATCCATTGGTTTTGAGTTGGTGGAGgtaa--tccctgatctgattaatacactctg-attttttcacataggt-gtggttgtgggttag---tgcatccgtaaagcttgattttttgttttgatatatctatatct-tttgaattgcttacataccattctgtgttggcatcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360098|gb|EC922718.1|EC922718
EST:     ATGGGTGCTGTCAATTGGATTTGAGCTAATGGAG                         CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGT
genomic: ATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttct ... tcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGT