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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACTCTGGCCAGAGTCGCACAAACTCTATGGTCACGGGAATGAGCTGTTTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatctttttatctttgctagtgttatattacttgattttctaatttctagatgacttaatatagccacgttttgagatattgcagtgatgatacctt...

Basic information

species Vitis vinifera
transcript Vv01s0011g04130.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G042371_T01 (Zea mays), 5'ss of exon 5
TACACTCTGGCCAGAGTCGCACAAACTCTATGGTCACGGGAATGAGCTGTTTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtat-atctttttatctttgctagtgttatattacttgattttctaatttctagatgacttaatatagccacgttttgagatattgcagt--gatgatacctt
||| || ||||| || ||||||||||| |||||||| || || ||||| || ||| | ||||||||  | | ||||||||||||||||||||| || |||||||   |  |  || ||| |  ||| || ||      | ||  ||||      |  ||  |||| |   |         || |||   |  ||||  | |  
TACTCTATGGCCTGAATCGCACAAACTATATGGTCATGGAAACGAGCTCTTCTCTATATGCTGTGATTATGAAGGGAAGCTTGTTGCTTCATCTTGCAAGgtattggcgctgcatgttttcctgtgcta-atcgtggaaattgttaatagagcaacaac--aatacaaataatcacaagcatcttgtgatctgatggaaacac

upper sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G41620.1 (Glycine max), 5'ss of exon 8
TACACTCTGGCCAGAGTCGCACAAACTCTATGGTCACGGGAATGAGCTGTTTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatctttttatctttgctagtgttatattacttgattttctaatttctagatgacttaatatagccacgttttgagatattgcagtgatgatacctt--
|||||| ||||| || || ||||||||||||||||| || ||||| || |||||||| || || || ||    ||  ||||||||||||| ||||||||||||| |  | |||   ||    |||  |   | |     | | | |||  ||   |||  || || |    |  |     ||  | | |  |  |  |||  
TACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAATGAACTATTTTCTTTATGTTGCGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGgtatgtagtgttagtcttaactgtgc-acggtgcacctgtatattattgttattagacagaagat-gtagtgcctacttgtacggaaatccttgttgcttgc

upper sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 8
TACACTCTGGCCAGAGTCGCACAAACTCTATGGTCACGGGAATGAGCTGTTTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatctttttatcttt---gctagtgttatattacttgattttctaatttctagat----gacttaatatagccacgtt---ttgagatattgcagtgatgatacctt------------------
|||  | ||||| || || || |||||||||||||| || ||||| || |||||| | |||| ||||||    || || |||||||||||||| |||||||||  |   |  |  |||     |  | ||| | | ||| | | ||  |  | |||||    ||  |||   |||    ||   ||   | |||    |  | |||  |                   
TACTTTATGGCCGGAATCTCATAAACTCTATGGTCATGGTAATGAACTATTTTCTCTCTGCTCTGACCACAAGGGAAACCTTGTTGCTTCATCGTGTAAGgtaagttaatgcagttttcagaatttttttacacttcttcaatctcctagatttagattttagatctaactgagcaggattccattactaaattattatttttatatatgaaccacaaacttcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031220|gb|FQ445047.1|FQ445047
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|349832389|gb|FQ420950.1|FQ420950
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTTGGTTCA
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCA
EST: gi|34547373|gb|CF515605.1|CF515605
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|351054132|gb|FQ450214.1|FQ450214
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|351038018|gb|FQ460760.1|FQ460760
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|351016289|gb|FQ446149.1|FQ446149
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|351036140|gb|FQ463985.1|FQ463985
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|352793961|gb|FQ479203.1|FQ479203
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAAAAATATGGCTATGGCA
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCA
EST: gi|34546608|gb|CF514840.1|CF514840
EST:     TTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|34546788|gb|CF515020.1|CF515020
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|351054298|gb|FQ450381.1|FQ450381
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|37187736|gb|CF607089.1|CF607089
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|351043253|gb|FQ443974.1|FQ443974
EST:     TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
EST: gi|349817591|gb|FQ407381.1|FQ407381
EST:     TTTCTTTGTGCTGTGACCGGGGAGGGAAGCTTGTTGCTTCATCATGTAAG                         GCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG
genomic: TTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGgtatatcttt ... tattttgcagGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGG