1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCAATAATAGAGTATATTCCTTTGTTGGCAAGTCAGTTGGGTATAAAGTTTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGgtttgtgtttctctgtcttgtcaagcatcatttggaaatatataatgctttcttttttttattctactaattcaatcctttacaattctatatttttttt...
species | Vitis vinifera |
transcript | Vv01s0011g03280.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTTTCGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAG GTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAAEST: gi|110390370|gb|EC955275.1|EC955275
genomic: TTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGgtttgtgttt ... tgttgtgcagGTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAA
EST: TTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAG GTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAAEST: gi|351038699|gb|FQ464565.1|FQ464565
genomic: TTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGgtttgtgttt ... tgttgtgcagGTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAA
EST: TTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAG GTTTACTCCATTTGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAAEST: gi|30303438|gb|CB980232.1|CB980232
genomic: TTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGgtttgtgttt ... tgttgtgcagGTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAA
EST: TTTTCGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAG GTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAA
genomic: TTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGgtttgtgttt ... tgttgtgcagGTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAATAATAGAGTATATTCCTTTGTTGGCAAGTCAGTTGGGTATAAAGTTTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGgtttgtgtttctctgtcttgtcaagcatcatttggaaatatataatgctttcttttttttattctactaattcaatcctttacaattctatatttttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaata