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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATCATCAGAGCTTGATGCACTGAGTGGACCAGAGAAGGAACCAAACCGAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgtatgtttcgtttctgcatctgtttctgttaatttatacttcacatgttctacggtttacagaacaaatgatagaagtattttattttccctcaaattgggaagaacaaaacgtaaaatttgtagcaatgtgaataacaagaagttgaaaattgtgacaagtatggaaacaacattctgaattggacttgttcccag

Basic information

species Vitis vinifera
transcript Vv01s0011g02860.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G32630.1 (Glycine max), 5'ss of exon 7
TGTATCATCAGAGCTTGATGCACTGAGTGGACCAGAGAAGGAACCAAACCGAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgtatgtttcgtttctgcatctgtttctgttaatttatacttcacatgttctacggtttacagaacaaatgatagaagtattttattttccctcaaattgggaagaacaaaacgtaaaatttgtagcaatgtgaataacaagaagttgaaaattgtgacaagtatggaaacaacattctgaattggacttgttcccag
|||  |||| || |||||   | |   ||||||  |||||||||| | | |||||||||||||||||||||| |||| ||||||||| |||||||||||||||  |||          | || || || || |   |  |  ||||     |     || | |  |  |   | |   |   ||   |  || || |   | |                                                                                              
TGTTGCATCTGAACTTGAAATATTATCTGGACCCAAGAAGGAACCGACCAGAGAGTTTTTGATTCTGCAAGGAGTGCATTTTGCTTTTCGTGTTCATCAGgtaattttaaggctc---tttggttatgata-tcactcttctacatccctcataaactaaaaatgattttgcatagaaaaactaggctagctgaagtgtagcaa---------------------------------------------------------------------------------------------

upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G11260.1 (Glycine max), 5'ss of exon 8
TGTATCATCAGAGCTTGATGCACTGAGTGGACCAGAGAAGGAACCAAACCGAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgtatgtttcgtttctgcatctgtttctgttaatttatacttc-acatgttctacggtttacagaacaaatgatagaagtattttattttccctcaaattgggaagaacaaaacgtaaaatttgtagcaatgtgaataacaagaagttgaaaattgtgacaagtatggaaacaacattctgaattggacttgttcccag
|||  |||| || ||||||| | |   ||| || || || ||||||    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||      | |    ||  ||||||        ||| ||||  |||    |   | | |     ||       ||  |   |||  |   ||||     |||   | ||| | ||                                                                                  
TGTTGCATCTGAACTTGATGAATTATCTGGTCCTGAAAAAGAACCAGCTAGAGAGTTTTTGGTTCTGCAAGGCGTGCGTTTCGCTTTCCGTGTCCATCAGgtaa----tgctaggacacttgtttca-------tatgcttctgcatccctttgaggtcattaggca-----ctgattttgcttaggtaaactcagtgacggatagaaaaacctta----------------------------------------------------------------------------------

upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 8
TGTATCATCAGAGCTTGATGCACTGAGTGGACCAGAGAAGGAACCAAACCGAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgta----tgtttcgtttctgcatctgtttctgtt-aatttatacttcacatgttctacggtttacagaacaaatgatagaagtattttattttccctcaaattgggaagaacaaaacgtaaaatttgtagcaatgtgaataacaagaagttgaaaattgtgacaagtatggaaacaacattctgaattggacttgttcccag
|||  |||| || ||||||| |||   ||| || || || ||||||    ||||||||||| |||||||||| |||||||| ||||||||||| |||||||||    | |     || | ||| || || || | ||   ||   |||  | |||| |     |  ||    || |  | | |  |||   ||   | || ||                                                                                                   
TGTTGCATCTGAACTTGATGAACTATCTGGTCCTGATAAAGAACCAGCTAGAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctatgctactttttcatttgcttgtgctgaagacatgtatcat-tcttctgcatcccattgaggtcataa--gcactgattttgattaggtaaactt---------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352768423|gb|FQ469599.1|FQ469599
EST:     GAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAG                         TTCGCGGGAGGCTTTGATGCGGAGAGCATGAAGGTTTTTGAAGAACTGAGG
genomic: GAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgtatgtttcg ... ttgttcccagTTCGCGGGAGGCTTTGATGCGGAGAGCATGAAGGTTTTTGAAGAACTGAGG
EST: gi|18458157|gb|BM436435.1|BM436435
EST:     GAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAG                         TTCGCGGGAGGCTTTGATGCGGAGAGCATGAAGGTTTTTGAAGAACTGAGG
genomic: GAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgtatgtttcg ... ttgttcccagTTCGCGGGAGGCTTTGATGCGGAGAGCATGAAGGTTTTTGAAGAACTGAGG