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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGGgtactaaccctttctttctttattattatttctttcatttctctttttaaaataagaagctattcttctcctagtatcataactcaagtctgctctctttctctcattttcattttttttttttgtcattgtaatgtgtag

Basic information

species Vitis vinifera
transcript Vv01s0011g01800.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g07350.1 (Oryza sativa), 5'ss of exon 7
GTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGGgtactaaccctttctttctttattattatttctttcatttctctttttaaaataagaagctattcttctcctagtatcataactcaagtctgctctctttctctcattttcattttttttttttgtcattgtaatgtgtag
|| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||  ||||||||| ||||||| || || |  || ||  | |||||||||  |     ||||  ||| |||||||        ||||  |   ||  | |       ||| || ||  || |||  |   |||                                                       
GTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCATGGGTGACCAACATAAATTTGTTCAAGGAATACACAGACATTAGCAGGgtaa-agtgaattctcccttcattattacacaacaaatttaccccctttgacttttgctttatcctcctt-tattattttttttcag------------------------------------------------------

upper sequence: Vv01s0011g01800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G25880.1 (Glycine max), 5'ss of exon 7
GTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGGgtactaaccctttctttctttattattatttctttcatttctctttttaaaataagaagctattcttctcctagtatcataactcaagtctgctctctttctctcattttcattttttttttttgtcattgtaatgtgtag
|| || | ||||||||||||||| || ||||| ||||| |||||||| ||||||||||| |||||||| || || ||||| ||||| ||||||||||||||| |   |     | | || | |   |  || ||  | |||   ||  |  | |     |||||||  | | |     ||                                                            
GTGGAACGATCTCTTCTAGTGACAGGCTTTGGGTATGATCATGATGATGCATGGGCTACGAACATAGACTTATTCAAAGAATTTACGGATGTCAGCAGGgtatttgtctgaaatctattaaattgcacctcatt--tctctgccttccacttca-----tattcttgactttgatgtttag-----------------------------------------------------------