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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCCTTATGGTTCATCTGAAGGTGAACTAGCTAAAATGTTTGGGAAATATGGGAGTTTGGACAAAATTATTCTTCCTCCGACAAAAACATTAGCCTTGgtatatgtttattctttataatcttgagttatattgcataaggttttatatgccattaggtttttaatgagttccaattcttgaatcttttttcttgaac...

Basic information

species Vitis vinifera
transcript Vv01s0011g01060.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G09970.1 (Glycine max), 5'ss of exon 9
CTTGCCTTATGGTTCATCTGAAGGTGAACTAGCTAAAATGTTTGGGAAATATGGGAGTTTGGACAAAATTATTCTTCCTCCGACAAAAACATTAGCCTTGgtatatgtttattctttataatcttgagttatattgcataaggttttatatgccat-taggtttttaatgagttccaattcttgaatcttttttcttgaac-
|||||| ||||||||  | |||  |||||| || || ||||||||||||| ||| |||||||| ||||| ||||| ||||| ||||| ||||| ||  |||||||| |||  |  ||||  | ||    | | ||  | | |  |||  |    || | || | ||    || ||  ||| |   ||||| |  | |     
CTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGgtatatttttcattcttattttttttttatgtttttgacatgcctttgcagtttatattggatatttgctagctc--attatcctatcttatagcctagttt

upper sequence: Vv01s0011g01060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G24510.1 (Glycine max), 5'ss of exon 6
CTTGCCTTATGGTTCATCTGAAGGTGAACTAGCTAAAATGTTTGGGAAATATGGGAGTTTGGACAAAATTATTCTTCCTCCGACAAAAACATTAGCCTTGgtatatgttt--attctttataatcttgagttatattg--cataaggttttatatgccat-taggtttttaatgagttccaattcttgaatcttttttcttgaac
|||||| ||||||||  | |||  |||||| || || ||||||||||||| ||| |||||||| ||||| ||||| ||||| ||||| ||||| ||  |||||||  |||  ||||||| | |  ||   |||| ||    ||  |  |  | |    || | || | ||    || |   ||| |   ||||| |    |    
CTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGgtatactttttcattctttctcaattttttttatgtttatgatgtgcctccacagtttatgttggatatttgctagctt--attatcatatcttatagtcta---