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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAAAATCTGAGAAGAATTCTAgtgagttcttttttaacttgctgctattattggctttgcattaactttgatgctaacataattcatttattcag

Basic information

species Vitis vinifera
transcript Vv01s0010g03700.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808005|gb|FQ402396.1|FQ402396
EST:     GCTGCAAAATCTGAGAAGAATTCTA                         AACAAAAGATGCCTGATGGAAGTTGGAAGTGTGAGAAGTGTAGCAACATAA
genomic: GCTGCAAAATCTGAGAAGAATTCTAgtgagttctt ... atttattcagAACAAAAGATGCCTGATGGAAGTTGGAAGTGTGAGAAGTGTAGCAACATAA
EST: gi|349815268|gb|FQ400423.1|FQ400423
EST:     GCTGCAAAATCTGAGAAGAATTCTA                         AACAAAAGATGCCTGATGGAAGTTGGAAGTGTGAGAAG
genomic: GCTGCAAAATCTGAGAAGAATTCTAgtgagttctt ... atttattcagAACAAAAGATGCCTGATGGAAGTTGGAAGTGTGAGAAG
EST: gi|110381005|gb|EC946312.1|EC946312
EST:     GCTGCAAAATCTGAGAAGAATTCTA                         AACAAAAGATGCCTGATGGAAGTTGGAAGTGTGAGAAGTGTAGCAACATAA
genomic: GCTGCAAAATCTGAGAAGAATTCTAgtgagttctt ... atttattcagAACAAAAGATGCCTGATGGAAGTTGGAAGTGTGAGAAGTGTAGCAACATAA