1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTATTACCATTCATGGATGGTGGCCCCAAGGATCATCACGTCACTCTATCTCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGgtataccaggctttcttgctcttttctgctggtcattatctcatacttctgacacaatatgaaagtgggacatcgtttaactggtgatggttttccaaaa...
species | Vitis vinifera |
transcript | Vv01s0010g02050.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAG TGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGGEST: gi|110360003|gb|EC922468.1|EC922468
genomic: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGgtataccagg ... gtaatctcagTGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGG
EST: AAGCTCTCTGACTCCTCCCCAGAAAAATTCAAG TGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGGEST: gi|110402814|gb|EC963524.1|EC963524
genomic: AAGCTCTCTGACTCCTCCCCAG-AAAATTCAAGgtataccagg ... gtaatctcagTGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGG
EST: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAG TGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGGEST: gi|110374728|gb|EC939652.1|EC939652
genomic: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGgtataccagg ... gtaatctcagTGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGG
EST: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAG TGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGGEST: gi|30252973|gb|CB970524.1|CB970524
genomic: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGgtataccagg ... gtaatctcagTGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGG
EST: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAG TGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGGEST: gi|110689997|gb|EE066711.1|EE066711
genomic: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGgtataccagg ... gtaatctcagTGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGG
EST: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAG TGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGG
genomic: TCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGgtataccagg ... gtaatctcagTGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTACCATTCATGGATGGTGGCCCCAAGGATCATCACGTCACTCTATCTCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGgtataccaggctttcttgctcttttctgctggtcattatctcatacttctgacacaatatgaaagtgggacatcgtttaactggtgatggttttccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaaa