Sequence
atgc intronic sequence ATGC exonic sequenceAACACTGAAGAAAATTTCCAAAAGAAGATACTGAATGAAAGAATAGCAAGGTTATCAGGAGGAATTGCTATTCTTCAGgtgactgaaatttaccagagtcggcatcttgatcatctgttattatggagactgatttcttagctgacacattttactgtatcaacactag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G13980.1 (Glycine max), 5'ss of exon 8
AACACTGAAGAAAATTTCCAAAAGAAGATACTGAATGAAAGAATAGCAAGGTTATCAGGAGGAATTGCTATTCTTCAGgtgac-tgaaatttaccagagtcggcatcttgatcatctgtta-ttatggagactgatt---tcttagctgacacattttactgt-atcaacactag------------
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AATACTGTAGAAAATTTCCAAAAGAATATATTGAATGAAAGGATAGCAAGGTTATCTGGGGGCATTGCTATTCTTCAGgtactgtgaatttcattttattttgtcttgtgacaatctggaagttaataattctgtttccatttaagatagttcatttacctttcagcaactgaaatctaaatcatag
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G09520.1 (Glycine max), 5'ss of exon 8
AACACTGAAGAAAATTTCCAAAAGAAGATACTGAATGAAAGAATAGCAAGGTTATCAGGAGGAATTGCTATTCTTCAGgtgac-tgaaatttaccagagtcggcatcttgatcatctgttattatggagactgatttcttagctgacacattttactgt-atcaacactag------------
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AATACAGTGGAAAATTTCCAAAAAAAGATATTGAATGAAAGGATAGCAAGATTATCTGGGGGCATTGCCATTCTTCAGgtactatgagtttcattttatttgtcatgt-gacaatctgtaatttaagaattctgtttcc-atttaagatagtttattttcagcaactgaaatctaaatcatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349815420|gb|FQ400575.1|FQ400575EST: CTATTCTTCAG GTCGGAGCTCAAACACAAGTTGAGCTGAAAGATAAACAATTGAGGATTGAA
genomic: CTATTCTTCAGgtgactgaaa ... tcaacactagGTCGGAGCTCAAACACAAGTTGAGCTGAAAGATAAACAATTGAGGATTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACACTGAAGAAAATTTCCAAAAGAAGATACTGAATGAAAGAATAGCAAGGTTATCAGGAGGAATTGCTATTCTTCAGgtgactgaaatttaccagagtcggcatcttgatcatctgttattatggagactgatttcttagctgacacattttactgtatcaacactag
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA