1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGATTATGCATTTGGCTCATCTGAGTCATCGCAAGAATTGGCTGTGGTCCCTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaatatttttttcgtccaaatattctttttccacatgatatctatagtatttcataactaagttgacgtgtgttacctggcctattctttcag
species | Vitis vinifera |
transcript | Vv00s0769g00010.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|351030826|gb|FQ438862.1|FQ438862
genomic: CAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|30125943|gb|CB911282.1|CB911282
genomic: CAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|33403350|gb|CF208977.1|CF208977
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|30253340|gb|CB970891.1|CB970891
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|77587533|gb|DV222932.1|DV222932
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|352790570|gb|FQ478209.1|FQ478209
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|351042032|gb|FQ456242.1|FQ456242
genomic: CAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|29783511|gb|CB349715.2|CB349715
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|110398522|gb|EC964942.1|EC964942
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|33403274|gb|CF208901.1|CF208901
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|349830992|gb|FQ418276.1|FQ418276
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|349830215|gb|FQ420475.1|FQ420475
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|349829935|gb|FQ422248.1|FQ422248
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|110400903|gb|EC967488.1|EC967488
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|28969463|gb|CB348496.1|CB348496
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGGGTCCTTTGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|110689806|gb|EE066352.1|EE066352
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|56409460|gb|CX017712.1|CX017712
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTCGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGCEST: gi|110377095|gb|EC942156.1|EC942156
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
EST: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAG GACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
genomic: CTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaata ... attctttcagGACAAGGAATCTTGGGATATGAACACTGAAGAGAAGATTGAGGCTGCTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTATGCATTTGGCTCATCTGAGTCATCGCAAGAATTGGCTGTGGTCCCTCCCAACTCAACAGTCTACTATGAAGTGGAGCTTGAGTCCTTTGTTAAGgtctgtaatatttttttcgtccaaatattctttttccacatgatatctatagtatttcataactaagttgacgtgtgttacctggcctattctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT