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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTGgtactacttgctttttcaagttttccaatcactttttccttgacagtgaaaacgaagtatgaaatttttaaatcctactcctcatctgacagtgtattggttttgaccttag

Basic information

species Vitis vinifera
transcript Vv00s0507g00020.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G042981_T01 (Zea mays), 5'ss of exon 14
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTGgtactacttgctttttcaagttttccaatcactttttccttgacagtgaaaacgaagtatgaaatt-tttaaatcctactcctcatctgacagtgtattggttttgaccttag
|||| | |||||||||||||| || ||||| ||||| || |||| ||| ||||| |||||||| ||||| ||  | ||||| ||  |||| |||||     ||| |   |  || |   |  ||  ||| | |   | ||    ||    | |   |||  ||| ||  || |||| | | |                        
GTACTTATACATTCCTCTTGGTGGTTCTCAAAGAAAACTACTGAGTATCTGGGTGATATTCACGTTTGTAGCAGTGTGGCATGATCTAGAATGgtagcttctgcataaccctgtgtctga--catgtttgcttactctgtcgccacatcatttctgattacttagat--taatcctaaacag------------------------

upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 14
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTGgtactacttgctttttcaagttttccaatcactttttccttgacagtgaaaacgaagtatgaaatttttaaatcctactcctcatctgacagtgtattggttttgaccttag
||| || ||||||||||||||||| ||| ||| |||||| || ||| | |||||| | |||||||||||||| || ||||| || ||||||||||| |  || | |||     || |||||   |  | |  |  ||  || ||| |  | | ||  ||||||     || |       |||     ||||  | | ||||||||
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgta-tgtttcccttt----attgtccaagttcaatctattctacc-tgtaaaagttgca-gagttttttatcagatattttatgcttgat----tattcttatggaccttag

upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 15
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTGgtactacttgctttttcaagttttccaatcactttttccttgacagtgaaaacgaagtatgaaatttttaaatcctactcctcatctgacagtgtattggttttgaccttag
||| || ||||||||||||||||| ||| ||| |||||| || ||| | |||||| | |||||||||||||| || ||||| || ||||||||||| |  || | |||   | | | | |||    | |    |  | || |||         ||  ||||||     || |       |||     | ||  | | ||||||||
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgta-tgtttcccttt---attgtccaaattcaatctattctaccggtaaaagttgca---gagttttttatcagatattttatgcttgat----tgttcttatggaccttag