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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGAGTAGTGACTAGCGTTATAGGTCGTTGGGCGGTCGGAAGGTTGCCACGAgtcattttgggggaccggaggcagggcagttctccgtgcaccggacacgtag

Basic information

species Vitis vinifera
transcript Vv00s0505g00030.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0505g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G840559_T01 (Zea mays), 5'ss of exon 2
-----------------------TTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGAGTAGTGACTAGCGTTATAGGTCGTTGGGCGGTCGGAAGGTTGCCACGAgtcattttgggggaccggaggcagggcagttctccgtgcaccggacacgtag------------------------------
                       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |  ||||| ||||| |||| |     || ||||||||||||||||||||                              
GCCGGCTTTTGTAGCAAATTCTATTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGAGTAGTGACTAGCGTTATAGGTCGTTgggcggccggaaggttgccatgagtaaggttgggagaccgaaggctg-----ttttccgtgcaccggacacgtagcttaccgaatcagttgcaacacagatggga

upper sequence: Vv00s0505g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA0886S00200.1 (Glycine max), 5'ss of exon 4
TTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGAGTAGTGACTAGCGTTATAGGTCGTTGGGCGGTCGGAAGGTTGCCACGAgt----cattttgggggaccggaggcagggcagttctccgtgcaccggacacgtag-------------------------------------------------
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    || |||||||||||| |||| |     |||||||||||||||||||||||                                                 
TTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGAGTAGTGACTAGCGTTATAGGTTGTTGGGCGGCCGGAAGGTTGCCACGAgtaagtcagtttgggggaccgaaggctg-----ttctccgtgcaccggacacgtagcttaccgaatccgttgcgacaccgatgggaatgcatgctacgaaagata