1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTGTTTCTCAGCTTGGGTCTGGAAAACAGCCTGTTGGCACCACAGCTTATATGGGGCGAGTTGCGGATTTGATGCAATGTTGTTGTGCTGTTCAAAGAGgtattgctcctttctcagagcatggttttaagcttctattaccttttggtattttcatgtctggagaggttgaagcaatacaatcccaatttgatcattt...
species | Vitis vinifera |
transcript | Vv00s0389g00020.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TATGGGGCGAGTTGCAGATTTGATGCAATGTTGTTGTGCTGTTCAAAGAG CTGAGGATTGGTTAAATCCTAGTGTAATACTGGAGGCATTTGAAGCAAGGTEST: gi|34548486|gb|CF516718.1|CF516718
genomic: TATGGGGCGAGTTGCGGATTTGATGCAATGTTGTTGTGCTGTTCAAAGAGgtattgctcc ... ctctcaacagCTGAGGATTGGTTAAATCCTAGTGTAATACTGGAGGCATTTGAAGCAAGGT
EST: TATGGGGCGAGTTGCAGATTTGATGCAATGTTGTTGTGCTGTTCAAAGAG CTGAGGATTGGTTAAATCCTAGTGTAATACTGGAGGCATTTGAAGCAAGGTEST: gi|30252118|gb|CB968757.1|CB968757
genomic: TATGGGGCGAGTTGCGGATTTGATGCAATGTTGTTGTGCTGTTCAAAGAGgtattgctcc ... ctctcaacagCTGAGGATTGGTTAAATCCTAGTGTAATACTGGAGGCATTTGAAGCAAGGT
EST: TGTTGTTGTGCTGTTCAAAGAG CTGAGGATTGGTTAAATCCTAGTGTAATACTGGAGGCATTTGAAGCAAGGTEST: gi|33402926|gb|CF208553.1|CF208553
genomic: TGTTGTTGTGCTGTTCAAAGAGgtattgctcc ... ctctcaacagCTGAGGATTGGTTAAATCCTAGTGTAATACTGGAGGCATTTGAAGCAAGGT
EST: TATGGGGCGAGTTGCAGATTTGATGCAATGTTGTTGTGCTGTTCAAAGAG CTGAGGATTGGTTAAATCCTAGTGTAATACTGGAGGCATTTGAAGCAAGGT
genomic: TATGGGGCGAGTTGCGGATTTGATGCAATGTTGTTGTGCTGTTCAAAGAGgtattgctcc ... ctctcaacagCTGAGGATTGGTTAAATCCTAGTGTAATACTGGAGGCATTTGAAGCAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGTTTCTCAGCTTGGGTCTGGAAAACAGCCTGTTGGCACCACAGCTTATATGGGGCGAGTTGCGGATTTGATGCAATGTTGTTGTGCTGTTCAAAGAGgtattgctcctttctcagagcatggttttaagcttctattaccttttggtattttcatgtctggagaggttgaagcaatacaatcccaatttgatcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagcaa