Sequence
atgc intronic sequence ATGC exonic sequenceGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttccttctccttcctgggtgtggctgtctgtatcttttggactcagcaaagtcctcaattccaattcacatgtttatttgttaaaaagaatgttgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 7
GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttccttctccttcctgggtgtggctgtctgtat--cttttggactcagcaaagtcctcaattc-caattcacatgtttatttgttaaaaagaatgttgt--
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GTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAGgt---tggatatattaaatgagcattgttggctacacaactttttcaccttttaaaatatctaatacgctagtgtcttgttcttttttcaat--gcctgttacag
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G25460.1 (Glycine max), 5'ss of exon 7
GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttccttctccttcctgggtgtggctgtctgtatcttttggactcagcaaagtcctcaattccaattcaca--tgtttatttgttaaaaagaatgttgt
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GTGTAAAAATATGGTTTCTTGCCATTATCTACTTCATAGCAGGGGTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa-taattcttatgtgcatttatttgttttattttt-tttaatgtattatgcaacttcaatttgtgagcatttattttataacttgtatactaa
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G07480.2 (Glycine max), 5'ss of exon 8
GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttccttctc---cttcctgg-gtgtggctgtctgtatcttttggactcagcaaagtcctcaattccaattcacatg--tttatttgt-taaaaagaatgttgt
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GAGTGAAAATATGGTTTCTTGCTATTATCTACTTCATAGCAGGAATTCCTGGAGCATATGTCTTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaattatttcccagacttacaggcattaggctggtta-atttttgccaatatgcaattgcaaactttcctatttatattgcttcacttgtgtgagatcaa------
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 9
GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttccttctc---cttcctgggtgt--ggctgtctgtatcttttggactca-gcaaagtcctcaattccaattcacatgtttatttgttaaaaagaatgttgt
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GAGTGAAAATATGGTTTCTTGCTATTATCTACTTCATAGCAGGAATTCCTGGAGCATATGTCTTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaattatttcccagacttaacaggcattaggctggttaatttttgccaactaatatacaattgcaaactttcctatttatattgcttcacttgtgtgag------
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G31090.1 (Glycine max), 5'ss of exon 8
GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttcct-tctccttcctgggtgtggctgtctgtatcttttggactcagcaaagtcctcaattccaattcacatgtttatttgttaaaaagaatgttgt
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GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaatttaatgcttacgcgcatttattggttttattttttct-aatgtattatgcaactgcaatttgtgaacatttattttataacttgtatagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110694691|gb|EE072020.1|EE072020EST: GTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAG GAATGAAAGTGCTTTGAAGTTTGGATGGTTTTTCATGTTTTATTTG
genomic: GTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttcctt ... tttcttacagGAATGAAAGTGCTTTGAAGTTTGGATGGTTTTTCATGTTTTATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttccttctccttcctgggtgtggctgtctgtatcttttggactcagcaaagtcctcaattccaattcacatgtttatttgttaaaaagaatgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa