Sequence
atgc intronic sequence ATGC exonic sequenceGATATATATCTTATAACTTTGTCATAGGCGCATACTCTTACTGGGGGCCAAAAGCTGGTTATAATATTTATAATATGgttagttcatacctattttaatgtgttaatagtaaatttatgttattcagtatgtcacatactccctccttttaatttcataatacttgcacatcatagatgctgtttgaaataaaaacaaaatattataaaacaccaagcaatatgactgttatttgaggtcaggttactttgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 11
GATATATATCTTATAACTTTGTCATAGGCGCATACTCTTACTGGGGGCCAAAAGCTGGTTATAATATTTATAATATGgttagttcatacctattttaatgtgttaatagtaaatttatgttattcagtatgtcacatactccctccttttaatttcataatacttgcacatcatagatgc-tgtttgaaataaaaacaaaatatt-ataaaacaccaagcaatatgactgttat-ttgaggtcaggttactttgtgcag
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GTTACATAGCATACAACTTTGTCATAGGTGCTTACTCATACTGGGGGCCCAAAGCTGGCTATAATATATATCACATGgtgagagtttgcttcatccaatgacccctta-tgcatataattgcactattgtagttgttccttctttcttata-tatcttgtttcttgcatggaatttaaacatgcctagtcagtaaatacactttccatgtaagatataata-tgctattgtaatattaaagttggattactttgt-tag
upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G06660.1 (Glycine max), 5'ss of exon 9
GATATATATCTTATAACTTTGTCATAGGCGCATACTCTTACTGGGGGCCAAAAGCTGGTTATAATATTTATAATATGgttagttcatacctattttaatgtgttaatagtaaatttatgttattcagtatgtcacatactccctccttttaatttcataatacttgcacatcatagatgctgtttgaaataaaaacaaaatattataaaacaccaagcaatatg--actgttat-ttgaggtcaggttactttgtgcag
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GTTACATAGCATACAACTTTGTCATAGGTGCTTACTCATACTGGGGGCCCAAAGCTGGCTATAATACATATCACATGgtgagaatttgcttcatccaatg-atcccttgtgcatatgattgtactattgtagttgttccttctttcttata-tatcttgtttcttgcatggaatttattcattcctagtcagtaaatacactttccatg-taagatataatatgctattgtaatattggagttggattactttg-gtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871367|gb|DT020422.1|DT020422EST: GCGCATACTCTTACTGGGGGCCAAAAGCTGGTTATAATATTTATAATATG AGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTG
genomic: GCGCATACTCTTACTGGGGGCCAAAAGCTGGTTATAATATTTATAATATGgttagttcat ... ctttgtgcagAGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATATATATCTTATAACTTTGTCATAGGCGCATACTCTTACTGGGGGCCAAAAGCTGGTTATAATATTTATAATATGgttagttcatacctattttaatgtgttaatagtaaatttatgttattcagtatgtcacatactccctccttttaatttcataatacttgcacatcatagatgctgtttgaaataaaaacaaaatattataaaacaccaagcaatatgactgttatttgaggtcaggttactttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG