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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTGgtacataatctctggctttctgtctgataagtggcatccacactataaattgttgttttgaattgttttattctttatatgtgcgcag

Basic information

species Vitis vinifera
transcript Vv00s0233g00030.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 8
GTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTGgtacataatctctggctttctgtctgataagtggcatccacactataaat-tgttgttttga-attgttttattctttatatg----tgcgcag
|||||||| || |||||||||||||| ||||| || || ||||| ||||||||| | || ||||| || |||| | || ||||    |      |  ||  |  ||   |    | |  | | |  |  ||| |||| |  |      | |||    || ||||
GTTTTAGAAGTTCGTCCTGTGATTGATTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGgta-agaacctctcttctgtctcttattacataccaagtatgacaaaggtgtttaatcatgatattgctgaacatgcaaaatggttttgtgcag

upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTGgtacata-atctctggctttctgtctgataagtggcatccacactataaattgttgttttgaattgttttattctttatatgtgcgcag
||||||||||| ||||||||||| ||||||||||| || | ||| || || |||||  | ||||| || |||| ||| ||   | | | |   |    |  || |  ||     | || |  | || ||  | | ||  | |  |  |    ||   ||
GTTTTAGAGGTTCGTCCTGTGATAGACTGGAACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATCTCTCGgtatatatatacattgttataatttcatttcgtagtttct-tgttctagaccgatgatt--agtcgtaatttgatcaaatcttgtttag