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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCACTTCTGTTACCAAGAAAACTTAGTCTTGCTTGGAGATGAAGTTTACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgctgttatgaaattaactattcctgggtctttacctggagactatcttgaatttataccatattttcctccaaccctgaaag

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 6
ATTGCACTTCTGTTACCAAGAAAACTTAGTCTTGCTTGGAGATGAAGTTTACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgctgttatgaaattaactattcctgggtctttacctggagactatcttgaatttatac---catattttcctccaaccctgaaag-----------
  |  | ||||| | ||| || ||||||||  |||||| ||||||||| || |||||||| ||||| || ||||||||||| ||||| |||||||||||||||      || | |   |      || | |   || | |     | | | ||   |  || |||   ||| |  |   ||||   | |||            
TCTCAAATTCTGCTTCCATGAGAACTTAGTTCTGCTTGCAGATGAAGTCTATCAACAGAACATTTATCAAGATGAGCGCCCATTTATAAGTGCTAGAAAGgta-acttttgatttctgacccgtgatgcttta-tcatgaatacaacatt-tcccaaccttttactttcatgtggtataccaaaaattaaaatgaacataata

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 7
ATTGCACTTCTGTTACCAAGAAAACTTAGTCTTGCTTGGAGATGAAGTTTACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgta-----------tggc-----gctgttatgaaattaact-attcctgggtctttacctggagactat-cttgaatttat---accatattttcctccaaccctgaaag
  |||  |  || ||||| |||||||||||  |||||| ||| ||||| || || |||||  |||| || ||||||||||| ||||| || || |||||||||           ||||       | || ||  || |||| ||   ||   ||| |||| |     ||  |||   | |    | |||   || ||| |    |   ||
TGTGCGATATTGCTACCATGAAAACTTAGTTCTGCTTGCAGACGAAGTGTATCAGCAGAACGTTTATCAAGATGAGCGCCCATTTATAAGCGCAAGAAAGgtacttttgatttctggccaataattcttttgtcatgaactcatggttgcaacttgacctaggcttaatatttgggctcaccaaaacatgcctttctcgactttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349817756|gb|FQ407745.1|FQ407745
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATTAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351019694|gb|FQ439511.1|FQ439511
EST:     CCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCCAGGAGCTCCAGCTTGTTTC
genomic: CCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAA-Ggtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTC
EST: gi|30299046|gb|CB975840.1|CB975840
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTATAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|32270153|gb|CD719312.1|CD719312
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110389517|gb|EC954364.1|EC954364
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|28960785|gb|CB340400.1|CB340400
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GCTTTGATGGACATGGG-CCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|71877299|gb|DT026354.1|DT026354
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|32247739|gb|CD713558.1|CD713558
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351036202|gb|FQ464047.1|FQ464047
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351023682|gb|FQ448233.1|FQ448233
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAGGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|18458318|gb|BM436596.1|BM436596
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|294966650|gb|GW839641.1|GW839641
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCATCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|32248182|gb|CD714001.1|CD714001
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|29784204|gb|CB344645.2|CB344645
EST:     ATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|27580138|gb|CB002833.1|CB002833
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349833249|gb|FQ416627.1|FQ416627
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGAATG-ACATGGGCCCACCC
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGA-TGGACATGGGCCCACCC
EST: gi|27582523|gb|CB005218.1|CB005218
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349807317|gb|FQ401309.1|FQ401309
EST:     ACCAACAGAATATTTACCANGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAACTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|27579398|gb|CB002093.1|CB002093
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349808113|gb|FQ403300.1|FQ403300
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|30325827|gb|CD009089.1|CD009089
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110361483|gb|EC924957.1|EC924957
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110689868|gb|EE066470.1|EE066470
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|30299121|gb|CB975915.1|CB975915
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351048786|gb|FQ449654.1|FQ449654
EST:     ACCCACAGAATATTTACCAAGATGAGCGCCCTTTTATCAGTGCTATAAAG                         GTTTTGATGGACATGGGCCCACCCA
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCA
EST: gi|18459781|gb|BM438059.1|BM438059
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110372740|gb|EC936928.1|EC936928
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110417553|gb|EC983619.1|EC983619
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349820046|gb|FQ404768.1|FQ404768
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349808629|gb|FQ405773.1|FQ405773
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGAAGGACATGGG
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGG
EST: gi|349821055|gb|FQ404308.1|FQ404308
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349821509|gb|FQ408068.1|FQ408068
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAAAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110362940|gb|EC926503.1|EC926503
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110707090|gb|EE083187.1|EE083187
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110379655|gb|EC944867.1|EC944867
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351025435|gb|FQ435127.1|FQ435127
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110377565|gb|EC942640.1|EC942640
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110687378|gb|EE064734.1|EE064734
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|71857816|gb|DT006871.1|DT006871
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349811946|gb|FQ410743.1|FQ410743
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCACTGCTAGAAAG                         GTTTTGATGGACA
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACA
EST: gi|71874055|gb|DT023110.1|DT023110
EST:     AACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: AACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351024976|gb|FQ433393.1|FQ433393
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGATTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|32248822|gb|CD714641.1|CD714641
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|71874947|gb|DT024002.1|DT024002
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|30299262|gb|CB976056.1|CB976056
EST:     AGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: AGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGCACTTCTGTTACCAAGAAAACTTAGTCTTGCTTGGAGATGAAGTTTACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgctgttatgaaattaactattcctgggtctttacctggagactatcttgaatttataccatattttcctccaaccctgaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG