Sequence
atgc intronic sequence ATGC exonic sequenceAACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttataagagttttcaggatctttccttttttatgactttggtattgttcctttgtaagatttccaatattcataaatttccaatgtctaatatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 9
AACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaat---ttataagagttttcaggatctttccttttttatgactttggtattgttcctttgtaagatttc-caatattcataaatttccaatgtctaatatt
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AACCATTGCTCCTGGTCTGTATGCACCTGTTCACCAACACTTTTTTGTTGCCCGTATGGACATGGCTGTTGATTGTAAACCTAACGAGGCTCATAATCAGgtgggttgctttttatgcatttcaattaaagttttgctggatatactgaatagaagttttccacctagttccacaataaggccta--tcataatgt-tacttt-
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 8
AACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttataagagttttcaggatctttccttttttatgactttggtattgttcctttgtaagatt-tccaatattcataaatttccaatgtctaatatt
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TACTATTGCCCCTAGTTTGTATGCACCGGTGCACCAGCATTTCTTTGTCACCCGTATGGACATGGCAGTTGATTGCAAACCAAATGAGGCCTATAATCAGgtatgtttgcccatcatccatgcatcttagttgtccacatgcatcggc-tacttccagtatgatattgttccatgccctattatcttgtttatttttcgtg
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 8
AACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttataagagttttcaggatctttccttttttatgactttggtattgttcctttgtaagatttccaatattcataaatttcca--atgtctaatatt--
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AACTATTGCCCCTGGTCTGTATGCACCAGTTCATCAGCATTTCTTTGTTGCCCGTATGGACATGGCTGTTGATTGCAAACCTAATGAAGCTCATAACCAGgttgggggttgccatctatttgcaccttt--tttttaatcaatcaa--atcgctcacaaaaatcgtttgcaatctgaatgggaccacacaaaattcaattatat
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G04360.1 (Glycine max), 5'ss of exon 8
AACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttataa----gagttttcaggatctttccttttttatgactttggtattgttcctttgtaagatttccaatattcataaatttccaatgtctaatatt
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GACTATTGCACCTGGATTATATGCACCTGTCCACCAACACTTTTTTGTTGCTCGTATGGACATGGCTGTTGATTGCAAGCCTGGTGAAGCATTTAATCAGgtcagtgtgcaactatatacttttcagttggcaatgtcttcatt-cttcaatgctgaagtctgaaagaatattttggttgactcattcttcaatattttga---
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G20800.1 (Glycine max), 5'ss of exon 8
AACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttataaga--gttttca---ggatctttccttttttatgactttggtattgttcctttgtaagatttccaatattcataaatttccaatgtctaatatt
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-ACCATTGCACCTGGACTATATGCGCCTGTCCACCAACATTTTTTTGTTGCTCGTATGGACATGGCAGTAGATTGCAAGCCTGGTGAAGCATTTAATCAGGttagaatgcaatttcattttcaagtgggcaggttctttaatgcaaaaggcaaatttttcttctcccccacctggcctaatcttataatagtaacaa-tagt---
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 8
AACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttataag--agttttca---ggatctttccttttttatgactttggtattgttcctttgtaagatttccaatattcataaatttccaatgtctaatatt
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AACCATTGCACCTGGACTATACGCGCCTGTCCACCAACATTTTTTTGTTGCTCGTATGGACATGGCAGTAGATTGCAAGCCTGGTGAAGCATTTAATCAGgttagcgtgcaatttcattttcaactgggcaggttctttcatgcaaaaggaaattttttcttctcccccacctggcctaatcatataatggtaacaatag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718570|gb|FC065389.1|FC065389EST: CTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAG GTTGTTGAGGT-AATGTTAAA-TTGAAGA-CCAGGGAAGA-TAATG
genomic: CTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttat ... ttttctatagGTTGTTGAGGTCAATGTTAAAGTTGAAGAACCAGGGAAGAATAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttataagagttttcaggatctttccttttttatgactttggtattgttcctttgtaagatttccaatattcataaatttccaatgtctaatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT