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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCTTCGATCACACACTTTATCTATGCTAGTGAACGATACTCCTGGCGTTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttgatttgtgcttgtttctttgttctttccgattctcatgagatactaatttgagggtcatcttaatttcatgctctcag

Basic information

species Vitis vinifera
transcript Vv00s0220g00110.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818318|gb|FQ409093.1|FQ409093
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|352786516|gb|FQ479125.1|FQ479125
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351035256|gb|FQ458613.1|FQ458613
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351034594|gb|FQ457951.1|FQ457951
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351012893|gb|FQ430456.1|FQ430456
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351031526|gb|FQ459783.1|FQ459783
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351046895|gb|FQ454505.1|FQ454505
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351043332|gb|FQ451384.1|FQ451384
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351040114|gb|FQ425200.1|FQ425200
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351044506|gb|FQ443037.1|FQ443037
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|352795642|gb|FQ480230.1|FQ480230
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|349822000|gb|FQ408329.1|FQ408329
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAA                         AGTCTAGCTGTGGGACCTGCTGAAATGGAAGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351017801|gb|FQ436154.1|FQ436154
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351032123|gb|FQ460380.1|FQ460380
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351054122|gb|FQ450204.1|FQ450204
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT
EST: gi|351039410|gb|FQ461277.1|FQ461277
EST:     TTCTCAACATAGTTACTGGGGTTATCTCTCGAAGAAGTTATAACATTCAG                         AGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACC
genomic: TTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttg ... atgctctcagAGTCTAGCTGTGGGACCTGCTGAAATGGAGGGGCGTTCTCATATTACAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGCTTCGATCACACACTTTATCTATGCTAGTGAACGATACTCCTGGCGTTCTCAACATAGTTACTGGGGTTATATCTCGAAGAAGTTATAACATTCAGgttggttttgatttgtgcttgtttctttgttctttccgattctcatgagatactaatttgagggtcatcttaatttcatgctctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT