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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaatcaaaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacag

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G33480.1 (Glycine max), 5'ss of exon 8
TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactg------caatcaaaacaatc------atacatctgagtttct--tttttttctctttttttggtttgacctcatttgatggtctggaaagtccaag-ttacatttttaaagtatttgacag
||||| |  |  || | ||||||||| |||||| ||||||||||||| |||| ||||||||| ||||| |||||||||||||| |||||||||||||||        |  |||||  ||       ||| |  | | | |    || | ||    ||| | | ||| |  |    || |  | |||||   | ||| ||  | || | ||| || | ||||
TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCTACTGCTTATGCACGTCTGTATGATTATGCACGCATTCGCAAGgtaacttgttgattatacaaaatgattttttaaatatagataaatattaaattgtcttggaatttgtggttttaaatttgaatggttatttggaacaccaaaggttgaacttgtgaagcatgttacag

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 8
TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaac-tgcaatcaaaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacag
 |||| |||  ||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| |||||||||||||||| |||| | ||||||||||  |||| ||| ||  ||     || |||  |  |||| |   |   ||    ||| ||  |  | |  |   |  | | |   |   |    ||||              
ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTCTATGATTATGAACGTGTACGCAAGgtaatatgcagtcacaagtatacggtatatga--tgattttataaatagattgcatgttagaatttttattttcaccgagtaggataagactgttgtttttt------------

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 9
TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaac-tgcaatcaaaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacag
 |||| |||   || ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||||| |||||||||| |||| | ||||||||||  |||| ||| ||  ||     ||  || |   ||| |       ||   | ||   |  |  | |  |   ||   |  | | | |       | |             
ATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAGgtaatatgcattcacaagtatacggtatagga-tgattttataaataaattgcatagtagaattttttattttcaccttttac-ttcgaatgctgacctcac------------

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaa-ctgcaa------tcaaaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtc--caagttacatttttaaagtatttgacag--------------
 |||| || || || |||||||||||||||||  | ||||| ||||||||||||||||||||||| |  || || || || || || ||| ||||    ||| |      | || |   |  ||    ||  ||| ||       | || ||    |||    |  ||  | | ||||  || |    ||    |  ||| |||      ||| |              
ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgctagtccttttaacaggtttctatgattggatttgttacacccatattattgcaatttagtat--ttgaaggatctgtgaacttgttaatcccccgtttgaaaactcacgactggctgttttttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407197|gb|CF212824.1|CF212824
EST:     CGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|27579405|gb|CB002100.1|CB002100
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|352781312|gb|FQ467758.1|FQ467758
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCCCAAG                         GGTTGTGACCAGCAGA
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGA
EST: gi|352769306|gb|FQ471455.1|FQ471455
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAAAAAGCTATCTTGTTGG
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGG
EST: gi|294966171|gb|GW839394.1|GW839394
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|351016424|gb|FQ423851.1|FQ423851
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|110373188|gb|EC937406.1|EC937406
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|32250119|gb|CD715938.1|CD715938
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|37184833|gb|CF604187.1|CF604187
EST:     CTGGTGCTAGTGCCTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|351053957|gb|FQ441723.1|FQ441723
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|30299931|gb|CB976725.1|CB976725
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGT
EST: gi|349823773|gb|FQ415184.1|FQ415184
EST:     CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG                         GTTTGTGANCA-GCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAG
genomic: CTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaactgcaa ... tatttgacagGTTTGTGA-CAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAG