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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCgtctctatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaag

Basic information

species Vitis vinifera
transcript Vv00s0211g00100.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 8
TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCgtctctatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaag
 |||| |||  ||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| |||||||||||                                                                                                       |  |   |   ||||||                                        
ATGGAGAAATCTGCTACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTCTATGATTATGAACGTGTACGCAAGgtaatatgcagtcacaagtatacggtatatgatgattttataaatagattgcatgttagaatttttattttcaccgagtaggataagactgt-tgtttttt----------------------------------------

upper sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G33480.1 (Glycine max), 5'ss of exon 8
TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCgtctctatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaag
||||| |  |  || | ||||||||| |||||| ||||||||||||| |||| ||||||||| ||||| |||||                                                                                                    |     ||     |          |    |||   |||   ||| | |  |         
TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCTACTGCTTATGCACGTCTGTATGATTATGCACGCATTCGCAAGgtaacttgttgattatacaaaatgattttttaaatatagataaatattaaattgtcttggaatttgtggttttaaatttgaatggttatttggaacaccaaaggttgaacttg---tgaag-catgttacag---------

upper sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 9
TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCgtctctatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaag
 |||| |||   || ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||||| |||||                                                                                                         |||  |    |                                            
ATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAGgtaatatgcattcacaagtatacggtataggatgattttataaataaattgcatagtagaattttttattttcaccttttacttcgaatgctgacctcac-----------------------------------------

upper sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCgtctctatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacaatcatacatttttttctcttt--ttttggtttgacctcatttgatggtctggaaag
 |||| || || || |||||||||||||||||  | ||||| ||||||||||||||||||||||| |  || ||                                                                                                         | |  |  ||       |       |   |  || |    |||  | |         
ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgctagtccttttaacaggtttctatgattggatttgttacacccatattattgcaatttagtatttgaaggatctgtgaacttgttaatcccccgtttgaaaactcacgactggctgttttttttag---------