Sequence
atgc intronic sequence ATGC exonic sequenceCTCCAAAAGTCAAGGTGCAGTAGAAGCTGATGATTTGAGCCATTGGGATCTCAACTTTTGGAGTGAGAGGCTTCGTGAGTCAAAATATGACATAAATGAGgttaagtctctcttcttttcaaaatgtatatgctaaatcatacttgaattttacacattgcagattctgtgctttatccagaatctattggtaagatttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 8
CTCCAAAAGTCAAGGTGCAGTAGAAGCTGATGATTTGAGCCATTGGGATCTCAACTTTTGGAGTGAGAGGCTTCGTGAGTCAAAATATGACATAAATGAGgttaagtctctcttcttttcaaaatgtatatgctaaatcatacttgaattttacacattgcagattctgtgct-ttatccagaatctattggtaagatttt---
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CTCCAAAAGTCAGGGAGCATTGGAAGCTGGTGATTTGACTCATTGGGACATTACCTTTTGGAGTGAGAGGCTACGTGAGTCAAAATATGATATTAATGAGgtttctctctctttccctctctcatttattacttagaaaaaacc--actttaagaaaacatggttaattaactgttacactggac--aataaagagattttgaa
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G02480.1 (Glycine max), 5'ss of exon 8
CTCCAAAAGTCAAGGTGCAGTAGAAGCTGATGATTTGAGCCATTGGGATCTCAACTTTTGGAGTGAGAGGCTTCGTGAGTCAAAATATGACATAAATGAGgttaa-gtctctcttcttttcaaaatgtatatgctaaatcatacttgaat-tttacacattgcagattctgtgctttatccagaatctattggtaagatttt
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CTCCAAAAGTCAGGGAGCATTGGAAGCTGGTGATTTGACTCATTGGGACATTACCTATTGGAGTGAGAGGCTACGTGAGTCAAAATATGATATTAATGAGgttgctatcttgctctctctctctctctcatttattagttataaaaaaacactttaagaaaacaaggttaattaactgtt--acactgaacaatgaaatttt
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 5'ss of exon 8
CTCCAAAAGTCAAGGTGCAGTAGAAGCTGATGATTTGAGCCATTGGGATCTCAACTTTTGGAGTGAGAGGCTTCGTGAGTCAAAATATGACATAAATGAGgttaagtctctcttcttttcaaaatgtatatgctaaatcatacttgaattttacacattgcagattctgtgctttatccagaatctattggtaagatttt
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CGCAAAGAACCAGGGTGCTGCAGAATCTGACAGTATGACTCATTGGGACACCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgtt----ctttgtccttctgtagctagtgatgc--aattatatattg-ttttgaaagtcttgatccttatctctcgttttggtctttctag---------
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G10540.1 (Arabidopsis thaliana), 5'ss of exon 8
CTCCAAAAGTCAAGGTGCAGTAGAAGCTGATGATTTGAGCCATTGGGATCTCAACTTTTGGAGTGAGAGGCTTCGTGAGTCAAAATATGACATAAATGAGgttaagtctctcttcttttcaaaatgtatatgctaaatcatacttgaattttacacattgcagatt-ctgtgctttatccagaatctattggtaagatttt
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TGCGAAGAACCAAGGTGCTGCAGAGGCTGACAGTTTGACTCACTGGGACATCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttc--tcgtccttattctttagtttgtgatacaattgtata-ttgttttacaatccttgccgcttattgctcactgcttgtaattttgtag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110732181|gb|EE107245.1|EE107245EST: TCAACTTTTGGAGTGAGAGGCTTCGTGAGTCAAAATATGACATAAATGAG GAGGAACTACGCCCCTATTTCTCATTGCCAAAGGTCATGGGTGGTCTTTTC
genomic: TCAACTTTTGGAGTGAGAGGCTTCGTGAGTCAAAATATGACATAAATGAGgttaagtctc ... aatccaacagGAGGAACTACGCCCCTATTTCTCATTGCCAAAGGTCATGGGTGGTCTTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCAAAAGTCAAGGTGCAGTAGAAGCTGATGATTTGAGCCATTGGGATCTCAACTTTTGGAGTGAGAGGCTTCGTGAGTCAAAATATGACATAAATGAGgttaagtctctcttcttttcaaaatgtatatgctaaatcatacttgaattttacacattgcagattctgtgctttatccagaatctattggtaagatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc