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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGgttggatcccatgccactattctcagttcaagattttaagctcttatgtatattaacgtatactttaatatcttttgtatggccgtgtatttgcttacat...

Basic information

species Vitis vinifera
transcript Vv00s0207g00150.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 11
GCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGgttggatcccatgccactattc---tcagttcaagattttaagctcttatgtatattaacgtatactttaatatcttttgtatggccgtgtatttgcttacat------------------------------------------------------------
||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| | || ||    || || || ||||| || |||||||| | |||| |||   | | |    ||  || || |    |      ||  | |        || |    ||| ||||| |   ||   | ||||| |    |                                                            
GCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAGgt-gaatcctatgttcccaattacttcccttaaaaaaaacagaaaaatacatttgaagtgccattcaaatataccttttttcatgcaaagcatttgttgtttttttcattctagacattggtgatttacatggttgcttctttaaacttgcttcctcttgtag

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 5
GCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGgttggatcccatgccacta-----ttctcagttcaagatttta----agctcttatgtatattaacgtatactttaatat--cttttgtatggccgtgtatttgcttacat--------------------------------------------------------------
||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | || ||    ||||| || ||||| || |||||||| | |||| |||   | |     ||| |  |  || |    |    ||     ||  || | ||  |  | |  |||||   |||   |     | ||||||| |   ||                                                              
GCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAAAATACTATACTCAAGTGTCGGATGTCTCGCCCGGGACAGgt-gaatcctatgttcccaattacttccctatgaaaaaacaaaggagagaaaaaatacatttgaaattccattcaaatatacttttaaaacaaaggagtatttgttattatttattaattctagacactggtgatttacatggtcgcttcttcaaatttgcttcctcttgcag

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 8
GCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGgttgg--atcccatgcca-ctattctcagttcaagattttaagctcttatgtatattaacgtatacttta--atatcttttgtatg-gccgtgtatttgcttacat-------------------------------------------------------
||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||||| || ||  |  |||| || || ||||| |   || | || ||| |  ||| |  |  || |||  ||     ||     ||   | |    ||||  |||||||||  ||  ||   ||||||  |||  |                                                       
GCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTTGGGTGCCGGTTGCCTCGCCCTGGGCAGgtggttcatgcaatcccaacctttccctatagaaaattaaaaaaagataaaagaatggccattccatttataatatcttttcaatatgcaaagtattta-ttatgtaaatccaatcgagggacttatatggaagcttcttcttacttgcatcctcttgtag

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 9
GCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGgttgg--atcccatgcca-ctattctcagttcaagattttaagctcttatgtatattaacgtatactttaatatcttttgtatggc-cgtgtatttgcttacat-----------------------------------------------------------------
||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||  | || ||  |  |||| || |||||||| |   || | |  ||| |  ||| |  |  || | |  ||      | | ||  | |       | ||||||||||   ||  | | |  || |||  | |                                                                  
GCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAGgtggttcatgcaaccccaacctttccctctagaaaaataaaaagaaaaaagaatggtcattccatttataatatctttgaaatatctcctcaatatgcaaagaatttatcttgtaaatcctatcgagtgacttatatggaagcttcttcttacttatatcctcttgtag