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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag...

Basic information

species Vitis vinifera
transcript Vv00s0207g00090.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g41470.1 (Oryza sativa), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag
||||||| ||||||||||| ||||| |||||||| || ||||||||||| || || ||||| || ||||||||||| ||||| |||||||||||||||||||| ||    ||| |||   |||   ||  |||       || |       ||   | |  |     ||||||  |||||       || |         
CTAATTCAAAGCCTTGTCCTAAGTGCAAGCGGCCCATTGAAAAAAACCAGGGATGCATGCACATTACATGCACACCTCCATGCAAATTTGAGTTTTGCTGgtatgtaatcataatctc--tctgtttatgctc-------ttcatagcacttgcagtctcatatggcttgtatgtacttgttctatataacgcag-----

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os09g33876.1 (Oryza sativa), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag
|| |||| ||||| ||||| || || || || || || || || || || || || |||||||| |||||||| || || ||||||||||||||||||||||||| ||     |||| |   ||  |    | |     |||  | |  | | |  || |     |||    |     ||      | |   ||      
CTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGgtaagcttcc---ctctcggcatatttgttttgatggtgattgtgtacattttgcattgaaattgtttatctttggtctgatttt-ccatggttgcag--

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G876621_T02 (Zea mays), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag
||||||| ||||||||||| || || || ||||| || |||||||| || || || ||||| ||||||||||| || ||||| ||||||||||| ||||||||||  |   |||| || | |    ||  || |   ||  ||   |    ||      |||      ||   | |  |  | |||              
CTAATTCAAAGCCTTGTCCCAAATGCAAACGGCCTATTGAAAAAAATCAGGGATGCATGCACATCACATGCACTCCACCATGCAAATTTGAGTTCTGCTGgtaagcattcttact-ttatgcattttattcttattagtgcttgcaaa---tgaaacaaattgatggctgcg-ctatcttactacag-------------

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G006428_T01 (Zea mays), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag
||||||| ||||||||||| || || |||||||| || |||||||| || || || ||||| ||||||||||| || ||||| ||||||||||| |||||||| |  |   | || || | |    ||  || |   || ||||| |  |        |  |   | |  |||| |     ||                 
CTAATTCAAAGCCTTGTCCCAAATGCAAGCGGCCTATTGAAAAAAATCAGGGATGCATGCACATCACATGCACTCCACCATGCAAATTTGAGTTCTGCTGgtaggcattctttcttttatacattttattcttattagt-tttagcaaatggaaaacatgatagttgtactatc-atactacag----------------

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G65430.1 (Arabidopsis thaliana), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag
| ||||||||||| |||||||| || || |||||||| || |||||||| |||||||||||||| || ||||| || ||||||||||||||||| |||||||||||| ||| | |  |    || | | | |   ||    | || || | || | ||  |  |  | |   |||  |   | |     | |||      
CAAATTCCAAGCCCTGTCCAAAATGCAAACGGCCAATAGAGAAAAACCAGGGTTGTATGCATATTACGTGCACCCCACCATGTAAATTTGAGTTCTGCTGgtaagttgataaagtggttgattaaacaaaatgctataatgtcagaagttatgcttttattctctctatacttcctgtaatctaactctgaattggattc

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S9_199V6.1 (Physcomitrella patens), 5'ss of exon 9
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtt-tatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattcca-ttttgtatccac--ttggcaacactagcattatcaag-------------------------------------------------------------------------------------------
| ||   ||| || ||||| || |||||  ||||||||||||| || ||||| || ||||| || || |||||||| || || |||||||||||||||||||||||  |  ||| | |   | |  ||  |    |||| ||  |  | |  |  |  |||    | |||| ||  |||   |    |   |  | ||                                                                                                 
CGAACAGCAAACCCTGTCCCAAATGTAAAAGGCCAATCGAAAAGAATCAAGGCTGCATGCACATTACTTGCACACCACCTTGCAAATTTGAGTTTTGCTGgtaagtaatggataatttcaat-tgaatctaaagtcatggatggatcatgattcattcttaccttaattttatagacacagctacttaagtttacgttgcttcactctgagtatgttgacaccagtggttggtaagtctatcacttataagcaaccaaatttattcactcagttttatttatgcgtttttgacag

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S178_72V6.3 (Physcomitrella patens), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtt-tatatact---cttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag------------------------------------------------------------------
| ||   ||| || || || || |||||| | || || |||||||||||||| || |||||||| || |||||||| || || |||||||||||||||||||||||| || ||| |   |||  | ||| || | | |  |   || |   | | | ||  |  |   || |   |  |||   ||     ||   | |||||                                                                   
CAAACAGCAAACCCTGCCCTAAATGTAAGAGACCGATTGAAAAAAACCAAGGCTGCATGCATATTACTTGCACACCACCTTGCAAATTTGAGTTTTGCTGgtaagttgtaaatattattcttactttagttaaattaaagttacttaattggatttagtactattaatatgtgaaagtcaccatgc--ttataaggtcatcaactcagctgctgcaattcatgttgcctcattctcaagtgtagcttttgaaccttgacttctttggcag

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S114_2V6.1 (Physcomitrella patens), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgttctagatagac------tcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag----------------------------------------------------------------------------------------------
| ||   ||| ||||| || ||||||||| ||||||| || ||||||||||| || ||||||||||| ||||| || || || |||  ||||||||||||||||    || || | |  || || | | |       | |  |    |||       |   |||  |  |   |   || |  |      || ||   | ||||                                                                                                
CAAACAGCAAACCTTGCCCCAAGTGTAAGAGGCCAATTGAGAAAAACCAAGGCTGCATGCATATCACTTGCACTCCACCTTGCAAACATGAGTTTTGCTGgtaaaca-atttaatgtaattttaaaaaaatagttttttattttcccttattgaagttaagcttgttaacgaatgaaattcggtcttgctcattaagctcatcagtgcagctgcggcagtccatgctattgtattttaacgctttgagtgtctggtttggaaatagtgtcacttacaagagttcactgatactataacag

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S156_28V6.1 (Physcomitrella patens), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgtt----ctagatagactcacatgtatttaggaggtctggtctttattccattttgtatcca---cttggcaacactagcattatcaag-----------------------------------------------------------
| ||   ||| || || || || |||||  ||||||| || ||||||||||| |||||||| || || |||||||| || || ||||||||||||||||||||||| ||     | || ||    || ||   |   |   || |  |     |||     | ||      | ||    |    || |   |  |||| | |    |                                                           
CAAACAGCAAACCCTGCCCCAAATGTAAAAGGCCAATTGAGAAAAACCAAGGGTGTATGCACATTACTTGCACACCTCCTTGCAAATTTGAGTTTTGCTGgtaagtctaatagattttattgggtctcgaggaatgaatgggtttaaattcactctccaactcatcgataatggttcttaagtttttgttgctttagcctgaatgggttgaaagctggtcattgataagacacttacttatgagcaacccacttttgtttctaaag

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ17699 (Selaginella moellendorffii), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag
| |||||||| |||||||||||||||||  | || |||||||||   ||||| || |||||||| || || || || || || || ||||||||||||||||| || | | |  | || |    ||| |||| |    | | | | ||                                                    
CCAATTCCAAACCTTGTCCAAAGTGTAAAAGACCGATCGAAAAATCTCAAGGATGCATGCATATAACGTGTACGCCTCCGTGCAAGTTTGAGTTTTGCTGgtaggtgt-tttctttttctcgctgat-gactgattgatgtgtggtag----------------------------------------------------

upper sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ16231 (Selaginella moellendorffii), 5'ss of exon 8
CTAATTCCAAGCCTTGTCCAAAGTGTAAGCGGCCAATCGAAAAAAACCAAGGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagt--ttatatactcttgttctagatagactcacatgtatttaggaggtctggtctttattccattttgtatccacttggcaacactagcattatcaag
| |||||||| |||||||||||||||||  | || |||||||||   ||||| || |||||||| || || || || || || || ||||||||||||||||| ||  || | |  ||| | |   |   || | |  |||  |                                                          
CCAATTCCAAACCTTGTCCAAAGTGTAAAAGACCGATCGAAAAATCTCAAGGATGCATGCATATAACGTGTACGCCTCCGTGCAAGTTTGAGTTTTGCTGgtaggtgatttttttttctcgctgatgtctgattgatgtgtggtag--------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37183601|gb|CF602955.1|CF602955
EST:     CCGCCATGTAAATTTGAGTTTTGCTG                         GCTTTGTCTTGGTGCATGGTCAGATCATGGTGAGAGGACAGGTGGTTTTTA
genomic: CCGCCATGTAAATTTGAGTTTTGCTGgtaagtttat ... atgcttgcagGCTTTGTCTTGGTGCATGGTCAGATCATGGTGAGAGGACAGGTGGTTTTTA
EST: gi|110378373|gb|EC943503.1|EC943503
EST:     GGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTG                         GCTTTGTCTTGGTGCATGGTCAGATCATGGTGAGAGGA
genomic: GGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttat ... atgcttgcagGCTTTGTCTTGGTGCATGGTCAGATCATGGTGAGAGGA
EST: gi|110383372|gb|EC947743.1|EC947743
EST:     GGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTG                         GCTTTGTCTTGGTGCATGGTCAGATCATGGTGAGAGGACAGGTGGTTTTTA
genomic: GGTTGTATGCATATCACATGCACACCGCCATGTAAATTTGAGTTTTGCTGgtaagtttat ... atgcttgcagGCTTTGTCTTGGTGCATGGTCAGATCATGGTGAGAGGACAGGTGGTTTTTA