1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATTTATCAACTGGTTGGCTTCATTGTGATCCTGGTCCGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGGgtgagtaagcagttcaatttgatctggaattatatgcaccaaatgttttgctcatccatcatgtctcctttgcaataactgaatcgtccatgcttgactt...
species | Vitis vinifera |
transcript | Vv00s0187g00380.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGTTGTTTAAGCCAGAGTATTTCGATTTATCANGATGGGTTCCTAGATGG TTTCCTTGGAAGGAGGTCTCCATTTTACCAGTTCAGTGGCATGCTTTATGTEST: gi|32271411|gb|CD720570.1|CD720570
genomic: CGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGGgtgagtaagc ... tcttgtgcagTTTCCTTGGAAGGAGGTCTCCATTTTACCAGTTCAGTGGCATGCTTTATGT
EST: CGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGG TTTCCTTGGAAGGAGGTCTCCATTTTACCAGTTCAGTGGCATGCTTTATGTEST: gi|32249768|gb|CD715587.1|CD715587
genomic: CGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGGgtgagtaagc ... tcttgtgcagTTTCCTTGGAAGGAGGTCTCCATTTTACCAGTTCAGTGGCATGCTTTATGT
EST: CGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGG TTTCCTTGGAAGGAGGTCTCCATTTTACCAGTTCAGTGGCATGCTTTATGT
genomic: CGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGGgtgagtaagc ... tcttgtgcagTTTCCTTGGAAGGAGGTCTCCATTTTACCAGTTCAGTGGCATGCTTTATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTATCAACTGGTTGGCTTCATTGTGATCCTGGTCCGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGGgtgagtaagcagttcaatttgatctggaattatatgcaccaaatgttttgctcatccatcatgtctcctttgcaataactgaatcgtccatgcttgactt
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