1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGATGGCATAGAGGAGATGTACAAAAAGGTCCATGCTTCCATACGAGCTGATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggcctacttttttcctcttatttggatgatacttgttgcttttgaattttgaggctcaataaatattgttaaaaaaaaattaaaatacataaatag...
species | Vitis vinifera |
transcript | Vv00s0174g00190.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAEST: gi|110419867|gb|EC986121.1|EC986121
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
EST: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAEST: gi|30137441|gb|CB922779.1|CB922779
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
EST: GATCCCACCCCAAAGAAATCTGAGAAAGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAEST: gi|30301305|gb|CB978099.1|CB978099
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
EST: GATCCCACCCCAAAGAAATCTGAGAAAGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAEST: gi|51050065|gb|CO818363.1|CO818363
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
EST: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAEST: gi|46917951|gb|CN547280.1|CN547280
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
EST: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAEST: gi|110727909|gb|EE105204.1|EE105204
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
EST: GATCCCACCCCAAAGAAATCTGAGAAAGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAEST: gi|32458156|gb|CD799330.1|CD799330
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
EST: GATCCCACCCCAAAGAAATCTGAGAAAGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAEST: gi|110418991|gb|EC985180.1|EC985180
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
EST: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAG GCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
genomic: GATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggccta ... tctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATGGCATAGAGGAGATGTACAAAAAGGTCCATGCTTCCATACGAGCTGATCCCACCCCAAAGAAATCTGAGAAGGAGCCTCCAAAGGTGCATAAGAGgtaaggcctacttttttcctcttatttggatgatacttgttgcttttgaattttgaggctcaataaatattgttaaaaaaaaattaaaatacataaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataca