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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTTGTACCTGTACCCTTTCCTCAATACCAATAGCAAATCTAGGCCTTTTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtccttgctaagttatagtttttaaattatgttgttgttctttccatatgacactaaaatattttgatttttaaagttgcatttacatttgtc...

Basic information

species Vitis vinifera
transcript Vv19s0090g00930.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g57130.1 (Oryza sativa), 5'ss of exon 5
ACCCTTGTACCTGTACCCTTTCCTCAATACCAATAGCAAATCTAGGCCTTTTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtccttgctaagttat--agtttttaaattatgttgttgttctttccatatgacactaaaatattttgatttttaaagttgcatttacatttgtc
 ||  |||| |||||||||||| | ||||| | ||||||  | |||||||||||||||||||| || || ||| | ||||| ||||| ||  | |||||||||  |          |  ||||  |  || | |   || | | |||  ||      ||  |    |   |||| |   |  |       ||   || |   
CCCACTGTATCTGTACCCTTTCTTGAATACTACTAGCAAGACAAGGCCTTTTGAGTACTTGAGGCTTACCAGCTTGGGTGTCATTGGCGCACTTGTGAAGgtaattgcaagccagaactttatgaaaattatgagggatatgggtgtgtttcttgagtggaagcgtagatttttaaagct--agaccattttctgatctact

upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 6
ACCCTTGTACCTGTACCCTTTCCTCAATACCAATAGCAAATCTAGGCCTTTTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtccttgctaagttatagtttttaaattat--gttgttgt-tctttccatatgacactaaa-atattttgatttttaaagttgcatttacatttgtc
 || ||||||||||||||||||||||| || |  |||||| | || |||||||||||| | || || |||||| | || || ||||||||| | || ||||||  |||| ||||  |  |||       |||  | |   ||||  |  || | | | ||  |||| | |  |    | |     |    ||  |  |||    
TCCATTGTACCTGTACCCTTTCCTCAACACTACCAGCAAAACGAGACCTTTTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtgcttggaagtttacctgaactaacatgtccattgtaatgcctctgcctctggtactagataggtgcatactacgcgatcaacagatctatt----

upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 5
ACCCTTGTACCTGTACCCTTTCCTCAATACCAATAGCAAATCTAGGCCTTTTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtccttgctaagttatagtttttaaattatgttgttgttctttccatatgacactaaaatattttgatttttaaagttgcatttacatttgtc-----------
|||  | || ||||| || ||||| ||||| |  ||||| || || || |||||||||||||| || || ||||| ||||| |||||||| ||||||||||||  || |||||||| |          |||| || | | | ||    |  || | || |  |||||  | ||    | ||  ||| |   || | |  |           
ACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAGgtattttttccttgctca----------ttaagttgt-tggatgcaaatatcacaagaaaacaaaattatatggcaatcaatattgaaaaaacttatcaccaaaatccttg

upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G43220.1 (Glycine max), 5'ss of exon 5
ACCCTTGTACCTGTACCCTTTCCTCAATACCAATAGCAAATCTAGGCCTTTTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtccttgctaagt-tatagtt---tttaaat-tatgttgttgttctttccatatgacactaaaatattttgatttttaaagttgcatttacatttgtc
||| || || ||||| || ||||| ||||| |  ||||| || || || |||||||||||||| || || || || ||||| |||||||| ||||||||||||  |  |||||||| | | ||| |||   |  |||  | |    |          |||||||| || |     |||||  ||| |     |   | ||     
ACCTTTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGTCTTGGTGTAATTGGTGCATTGGTGAAGgtatttcttccttgctcattctattgttggatgcaaacatctacattaaaaaaaattatatgacaatatacatgattgatgattatatggcaagcaatat-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161707254|gb|FC056419.1|FC056419
EST:     TTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAG                         GTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCG
genomic: TTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtc ... ctctttccagGTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCG
EST: gi|110384705|gb|EC949163.1|EC949163
EST:     TTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAG                         GTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCG
genomic: TTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtc ... ctctttccagGTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCG
EST: gi|110391951|gb|EC957020.1|EC957020
EST:     TTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAG                         GTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCG
genomic: TTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtc ... ctctttccagGTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCG
EST: gi|110730135|gb|EE106867.1|EE106867
EST:     TTGAGTACTTAAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAG                         GTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCG
genomic: TTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtc ... ctctttccagGTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCG