Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAGgtaagcagcatgtcctaaatgttgaaatttgctcagtgtttgtagtttaatttaaggatatatatgtttttgtattatattgcag

Basic information

species Vitis vinifera
transcript Vv19s0090g00750.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00750.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G079538_T02 (Zea mays), 5'ss of exon 11
GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAGgtaagcagcatgtcctaaatgttgaaa----tttgctcagtgtttgtagtttaatttaaggatatatatgtttttgtattatattgcag
|||||||||||||||||||||||||||||||||||||| |||| |   |||||||||||| || ||  |  |||||||  | ||||| ||||||     || ||| ||   |||| ||    ||||| |  |  || ||  |   |       ||||| |||||| |||           
GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAGCATGGTGTAAAATTGGGTCTTATGTCTTGCTTTGTCAAGgtatttgcca-gtcttaggcgttgcaaagcttttgcaccatacttttatgtggctggctaattatatttgttttggtag----------

upper sequence: Vv19s0090g00750.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM5G807639_T03 (Zea mays), 5'ss of exon 10
GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAGgtaagcagcatgtcctaaatgttgaaatttgctcagtgtttgtagtttaatttaaggatatatatgtttttgtattatattgcag
|||||||||||||||||||||||||||||||||||||| |||| |   |||||||||||| || ||  |  |||||||  | ||||| ||||||   ||    || ||  ||||| ||     |       |  | ||||   || || |   ||  ||| | |||| | |     
GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAGCATGGTGTCAAATTGGGTCTTATGTCTTGCTTTGTCAAGgtacttag----tcttatgtgttgcaaagcttttgaaccataca-ttta---tatggctggctaattttatttattttgtcag--

upper sequence: Vv19s0090g00750.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM5G807639_T02 (Zea mays), 5'ss of exon 10
GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAGgtaagcagcatgtcctaaatgttgaaatttgctcagtgtttgtagttta-atttaaggatatatatgtttttgtattatattgcag
|||||||||||||||||||||||||||||||||||||| |||| |   |||||||||||| || ||  |  |||||||  | ||||| ||||||   ||    || ||  ||||| ||       ||  |||| |   || |||||      |   |  |||| | |||| |||   
GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAGCATGGTGTCAAATTGGGTCTTATGTCTTGCTTTGtcaaggtacttag----tcttatgtgttgcaa-------agcttttgaaccatacatttatatggctggctaattttat-ttattttg---

upper sequence: Vv19s0090g00750.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G26910.3 (Arabidopsis thaliana), 5'ss of exon 7
GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAGgtaagca---gcatgtccta-aatgttga-aatttgct--cagtgtttgtagtttaatttaaggatatatatgtttttgtattatattgcag
||| |||||||||||||| || ||  | || || |||||||||| |||||||||||| ||||||||  |  ||||||| || ||| |||| |||  ||    | | |  |   || || | |||    |  ||| |||    | |      ||  |||      | || ||  | | |  |||
GACAAATTTGATGAAGCTCCGATCCCAATACAAGGATGCATTTTATGAAAAGCATGGAGTGAAGTTGGGGCTTATGTCTGGATTTATTAAAgtatacacttacttatttttcgatattaataatacaatgccagagttaaatgatagcaaaaataataccctattcttcgttatctgtctcag

upper sequence: Vv19s0090g00750.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S2_220V6.1 (Physcomitrella patens), 5'ss of exon 6
GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAGgtaa--gcagcatgtcctaaatgttgaaatttgctcagtgtttg-tagtttaatttaaggatat-atatgtttttgtattatattgcag-----------
|   ||  ||||| || | |||||| |  |||| ||  | ||| | |||||||||||||||||  || |||||||||| |||||||| ||||| |   || | |    ||  | ||      ||  |    | || |  |||  ||    | ||| |||     |      | | |||             
GGGTAACCTGATGGAGTTGCGTTCTCAACATAAGGACACGTTTCTGGAAAAGCATGGTGTGAAACTAGGATTTATGTCTGGGTTTGTGAAGgtgatgacacctttctttatgttttatggactgtcctagatctgatcattttcttcgctgttatcatagccaatgactagacaatgcgtaaaatgcagtt