Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAGgtattgcttatatttttctcagtttgataatagtagtatcttcttctgatgttgtgttaattgaaactgttgcataattttcatgcaaaaggatccaaga...

Basic information

species Vitis vinifera
transcript Vv19s0027g01200.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G078756_T01 (Zea mays), 5'ss of exon 7
TTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAGgtattgcttatatttttctcagtttgataatagtagtatcttcttctgatgttgtgttaattgaaactgttgcataattttcatgcaaaaggatccaaga---------
|||||| | | | ||||||| ||||||||||||||||||||||||||||    | | | |||||   | |  |   |     |   | || |||     |  |  || |   || ||   |||| |  ||    |   |  |            
TTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAGgtataatctctgtgtttctgtttcttgtttaatctacactattttttgagaaaataatc-ttcatcttggtgt-caattatgctgactgacagtttattgtttgtttag

upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AC211349.4_FGT001 (Zea mays), 5'ss of exon 7
TTCTCAAAGGACCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAGgtattgcttatatttttctcagtttgataatagtagtatcttcttctgatgttgtgttaattgaaactgttgcataattttcatgcaa-aaggatccaaga---------------
|||||| | | | ||||||| ||||||||||||||||||||||||||||    | ||| |||||   | | ||   |     |  |  || |  ||      || |    |   | |  |   ||     ||   |   |  |  |               
TTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAGgtataatctctatgtttctgtctcttatttaatgtacacttcatttttttgagaaaatagtcttcatcttggtgtcgattatgctcactgacagtttatcactattgtttgtttag