1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATATCTGTGAAAGGCTTCTCATTTAAGAATTCTGAAATTCTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgctattatgttggttactctgtggactagcaggggagaatggtgaatttaaatatctgttcctattcattattcaattttacttcttttcttctgtgccacaaag
species | Vitis vinifera |
transcript | Vv19s0027g00380.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGG-CATCCTGCTACTAN TGAACGTTGGGTATTGCCTTCA-CAATGGAATATGCAAGGGGCCTTGTTGCEST: gi|32246982|gb|CD712801.1|CD712801
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGC
EST: GTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAG TGAACGTTTGGTATTGCATTCAACAATGGAGTATGCAAGGGGCATTGTTGCEST: gi|32246630|gb|CD712449.1|CD712449
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGC
EST: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAG TGAACGTTTGGTATTGCATTCAACAATGGAGTATGCAAGGGGCATTGTTGCEST: gi|30323287|gb|CD006549.1|CD006549
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGC
EST: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAG TGAACGTTTGGTATTGCATTCAACAATGGAGTATGCEST: gi|26258185|gb|CA809248.1|CA809248
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGC
EST: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAG TGAACATTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGCEST: gi|110733105|gb|EE109004.1|EE109004
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGC
EST: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAG TGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGCEST: gi|27579341|gb|CB002036.1|CB002036
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGC
EST: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAG TGAACGTTTGGTATTGCATTCAACAATGGAGTATGCAAGGGGCATTGTTGCEST: gi|27581160|gb|CB003855.1|CB003855
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGC
EST: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAG TGAACGTTTGGTATTGCATTCAACAATGGAGTATGCAAGGGGCATTGTTGCEST: gi|27580311|gb|CB003006.1|CB003006
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGC
EST: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAG TGAACGTTTGGTATTGCATTCAACAATGGAGTATGCAAGGGGCATTGTTGC
genomic: CTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgcta ... tgccacaaagTGAACGTTGGGTATTGCATTCAACAATGGAGTATGCAAGGGGCGTTGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCTGTGAAAGGCTTCTCATTTAAGAATTCTGAAATTCTGAGCTGGGCCTTCTGTGACAGCAGCAAGCCAGGGCATCCTGCTACTAGgtaagtgctattatgttggttactctgtggactagcaggggagaatggtgaatttaaatatctgttcctattcattattcaattttacttcttttcttctgtgccacaaag
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