Sequence
atgc intronic sequence ATGC exonic sequenceACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagttactttatgcctaaatatgattttgcatttttttattcagtattaactggctctatgttcatttggttaatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G48060.2 (Glycine max), 5'ss of exon 3
ACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagtta--ctttatgcct-aaatatgattttgcatttttttattcagtatta--actggctctatgttcatttggttaatttcag-
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ACATCACATGTATGTTGTCAATGCTGGTTCTGGCTTTAAGAAGATGCTTTGGCCTGCTGCACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGATACAGgtgaagaatataatcttcaggcttcagctaatatttcatatgatctatttctgcagtgccactgaccttacattcatttcccaaatttccag
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G17830.1 (Glycine max), 5'ss of exon 6
ACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagttactttatgcctaaatatgattttgcat-ttttttattcagtattaactggctctatgttcatttggttaatttcag
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ACATCGAATGTATATCATCAATGCTGGTCCTGGATTTAAGAGGATGCTTTGGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAGgtaaagggtataacttttggctgg-tagcatttcatataccttttccggaagtcctgctgatattacgtacttccctaaattttcag
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G12450.1 (Glycine max), 5'ss of exon 7
ACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagtta--ctttatgcct-aaatatgattttgcatttttttattcagtatta--actggctctatgttcatttggttaatttcag-
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ACATCAAATGTATATTGTCAATGCTGGTTCTGGCTTTAAGAAGATGCTTTGGCCTGCCACACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGATACAGgtgaagaatataatcttcaggcttcagctaatatttcatatgatctatttctgcagtgccactgactttacattcatttcccaaatttccag
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G55690.3 (Arabidopsis thaliana), 5'ss of exon 8
ACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagttactttatgcctaaatatgattttgcatttttttattcagtattaactggctctatgttcatttggttaatttcag
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GCACAGAATGTACATTGTAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTCAGAAGTTTCTTGATGCAAAGACCATTGCAAAGATACACgtacagctttcagcctagttttctatttggtcaactattgccatgtgtagtttt--ctta-tctctgtcaatgcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110690338|gb|EE067360.1|EE067360EST: GGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAG GTGCTGGAGCCCAAATTCTTATGTAAACTTCTGGAAGTCATTGACTCAAG
genomic: GGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagt ... ttaatttcagGTGCTGGAGCCCAAATTCTTATGTAAACTTCTGGAAGTCATTGACTCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagttactttatgcctaaatatgattttgcatttttttattcagtattaactggctctatgttcatttggttaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC