1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGACGTGCTTTGGCCAATGTATCAGCATTACTTCGTCCAGGAGGCATCTTCATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcctgtgctcatgatattctccttggtcttgatttcatcatttcataccatttctttagcaaatataaaatgcattagaaatgtgcatttgatg...
species | Vitis vinifera |
transcript | Vv19s0014g04740.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAGGGTTGGCCATTGGTAATAGCGTATAACTGGATACGATTTGATGAAEST: gi|352786282|gb|FQ478893.1|FQ478893
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATA-CTGGATACGATTTGATGAA
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAGEST: gi|22011789|gb|BQ796823.1|BQ796823
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAGEST: gi|349829213|gb|FQ419745.1|FQ419745
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAGGGTTGGCCATTGGTAATAGCGTAEST: gi|349814559|gb|FQ399199.1|FQ399199
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTA
EST: CATCGGAACGATGCCNGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGAEST: gi|351041305|gb|FQ447432.1|FQ447432
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGA
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAGEST: gi|351046268|gb|FQ442646.1|FQ442646
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: CGTCGGAACGATGCCAGATGCCCATGTTATCATCAAAAAGCTTAGAGAAG CTGAAAGGTTGGCCEST: gi|349809129|gb|FQ398926.1|FQ398926
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCC
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAGEST: gi|349824512|gb|FQ413179.1|FQ413179
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAAAGAAA CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGAEST: gi|351056793|gb|FQ443420.1|FQ443420
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGA
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAGGGTTGGCCATTGATAATAGCGTATACTGGATACGATTTGATGAAGEST: gi|351038453|gb|FQ464319.1|FQ464319
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG CTGAAAGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGTGCTTTGGCCAATGTATCAGCATTACTTCGTCCAGGAGGCATCTTCATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcctgtgctcatgatattctccttggtcttgatttcatcatttcataccatttctttagcaaatataaaatgcattagaaatgtgcatttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttagaaa