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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATCCACAATACAGCAGGATCAGAAGCATCAAATGCAGGGTGCCGGCAGATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagttggacatatgctgtctttttaaataaattttctaatcaaacttcttgggtcttggaaacatgcttatcattaactagctgcattcacacat...

Basic information

species Vitis vinifera
transcript Vv19s0014g02670.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349830124|gb|FQ420384.1|FQ420384
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|110360991|gb|EC924439.1|EC924439
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCAGTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|110372369|gb|EC936527.1|EC936527
EST:     CAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: CAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|34542739|gb|CF510971.1|CF510971
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|351032346|gb|FQ461599.1|FQ461599
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|34542826|gb|CF511058.1|CF511058
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|110360325|gb|EC923306.1|EC923306
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTATTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|351045262|gb|FQ451710.1|FQ451710
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|349827500|gb|FQ422368.1|FQ422368
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|351029582|gb|FQ427422.1|FQ427422
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
EST: gi|71876759|gb|DT025814.1|DT025814
EST:     GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTT                         CTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT
genomic: GATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagtt ... ttttctccagCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAATCCACAATACAGCAGGATCAGAAGCATCAAATGCAGGGTGCCGGCAGATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTgtaagtagttggacatatgctgtctttttaaataaattttctaatcaaacttcttgggtcttggaaacatgcttatcattaactagctgcattcacacat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaca