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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTGCACACTGAAAAACAATACAGATCTTCTAGCCTGCAAAGCTGAATACTATCATCAATGCGGCGAATACCAAAAATGTTTTGAACTAACTGCTATgtaagttagaaactgcttctgaaaagaatagagctgtaatttgtttcttaatatgcctaatctgacctgattttttatgtttctcctacaacacttattccag

Basic information

species Vitis vinifera
transcript Vv19s0014g01170.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g13370.1 (Oryza sativa), 5'ss of exon 8
TCATTTGCACACTGAAAAACAATACAGATCTTCTAGCCTGCAAAGCTGAATACTATCATCAATGCGGCGAATACCAAAAATGTTTTGAACTAACTGCTATgtaagttagaaactgcttctgaaaagaatagagctgtaatttgtttcttaatatgcctaatctgacctgattttttatgtttctcctacaacacttattccag
        ||||||||||| ||||  ||  |  | || |||||||||||||||||||||||  | || || |||||||||||||| ||||| ||  ||  ||||||| | || || |||       | |   | |  | | |||||| |        | |||     || ||| | ||  || |  | | | |  |    |||
CAGGACTGACACTGAAAAATAATATTGACGTGTTGGCTTGCAAAGCTGAATACTATCATCAGAGTGGAGAGTACCAAAAATGTTTCGAACTCACATCTGCgtaagttggtaaatgattc-------attgtcggtaca-tatgtttcct--------tgatcaatattggtttatcattcttgtgatgctatatgtgcctcag

upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G32850.1 (Glycine max), 5'ss of exon 7
TCATTTGCACACTGAAAAACAATACAGATCTTCTAGCCTGCAAAGCTGAATACTATCATCAATGCGGCGAATACCAAAAATGTTTTGAACTAACTGCTATgtaagttagaaactgcttctgaaaa---gaatagagctgtaatttgtttcttaatat--gcctaat---ctgacctgattttttatgtttctc-----ctacaacacttattccag---------------
|  |  | |||||||||  |||||| |||||  | |||||||||||||||||||| ||||| ||||| ||||| || |||||||||||  ||||   |  |||||||    |     ||||   |    | |   | ||  ||     |||   | |  || | ||   ||| ||  | |  ||   | ||||     || |   |||||    |                
TTTTGCGGACACTGAAATCCAATACTGATCTATTGGCCTGCAAAGCTGAATACTACCATCAGTGCGGTGAATATCAGAAATGTTTTGAGTTAACAAATGAgtaagttgtggatctaatctggtgactgaagtgagggtgcgatacaactctggcttttggcttcattcactgtccccactcctttcttctctctctctcttcctgacttaccttaaataattctgttacag

upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G25700.1 (Glycine max), 5'ss of exon 7
TCATTTGCACACTGAAAAACAATACAGATCTTCTAGCCTGCAAAGCTGAATACTATCATCAATGCGGCGAATACCAAAAATGTTTTGAACTAACTGCTATgtaagttagaaactgcttctgaaaa---gaatagagctgtaatttgtttcttaatat--gcctaat---ctgacctgattttttatgtttctcctacaacacttattccag---------------------
|| |  |||||||||||   || || |||||  | ||||||||||||||||||||  |||| || || ||||| || |||||||||||  |||||  |  |||||||    |     ||||  ||    | |     || |||     |||   | |  || | ||   ||| ||  | |  ||   | | ||   |     || |||| |                     
TCTTGCGCACACTGAAATCTAACACTGATCTATTGGCCTGCAAAGCTGAATACTACTATCAGTGTGGTGAATATCAGAAATGTTTTGAGTTAACTAATGAgtaagttgtggatctaatctggcaactgaagtgagagtgcaatacaactctggcttttggcatcattcactgtccccactactttcttctgtctctctctctttcttcctgacttaaataattctgttacag

upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G78770.1 (Arabidopsis thaliana), 5'ss of exon 7
TCATTTGCACACTGAAAAACAATACAGATCTTCTAGCCTGCAAAGCTGAATACTATCATCAATGCGGCGAATACCAAAAATGTTTTGAACTAACTGCTATgtaagttagaaactgcttctgaaaagaatagagctgtaatttgtttcttaatatgcctaatctgacctgatttt--ttatgtttctcctacaacacttattccag--
  ||   |||| ||   || || || |||||  | ||||| |||||||| ||||| ||||||||| | ||||| || || |||||||||||||| ||   |||||  |        | |||   | | ||  ||||    |   |||| |  |     || ||    ||||| |     |||     ||      ||||||  |   
CTATGATCACATTGGCTAATAACACTGATCTGTTGGCCTGTAAAGCTGAGTACTACCATCAATGCTGTGAATATCAGAAGTGTTTTGAACTAACCGCGGCgtaagaaacttgagaatgctgtgtatattactgctgattctaaattctgagcaatatgaaacttgaatgattctagcagtgtggtctcttttggtcttatttgacag