Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACCAACCAAGTGACAGTGAAGTTGAAAAATTAGCCTGTGATGCAGAGAAGTACACTCTTGCAAATCATCTATTTTGGGGCATATGGGGAATAATTTCGgtatgcatttctgggttcattcgcttactatcaactgtattcatgcgggtataatctgagatttcacctgaatctatcactgatttgcag

Basic information

species Vitis vinifera
transcript Vv18s0157g00190.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0157g00190.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G08600.2 (Glycine max), 5'ss of exon 6
TAACCAACCAAGTGACAGTGAAGTTGAAAAATTAGCCTGTGATGCAGAGAAGTACACTCTTGCAAATCATCTATTTTGGGGCATATGGGGAATAATTTCGgtatgcatttctgggttcattcgcttactatcaactgtattcatgcg----ggtataatctgagatttcacctgaatctat-----cactgatttgcag--
|||  |||||||  | |||||||| ||  |  |||    |  |||||| || |||||||||||||| ||||||||||||||| | |||||| | |||||||||||  ||| |   ||  ||   |   ||  |  ||| ||  |        | |||   ||| |||     | | ||| |     || | |    |    
TAAGAAACCAAGCAATAGTGAAGTGGATCAGCTAGTGAATCTTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGCTTGTGGGGACTTATTTCGgtatgttttttttt-tttgttttttggataaaacatgtttttttatctctcagaatatcttgaaattcagttttagtctctataaacattaaaccactagg

upper sequence: Vv18s0157g00190.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G31030.1 (Glycine max), 5'ss of exon 7
TAACCAACCAAGTGACAGTGAAGTTGAAAAATTAGCCTGTGATGCAGAGAAGTACACTCTTGCAAATCATCTATTTTGGGGCATATGGGGAATAATTTCGgtatgcatttctgggttcattcgcttactatcaactgtattcatgcgggtataatctgagatttcacctgaatctat-cactgatttgcag
 ||  |||||||  |   | ||||  |  | |||||    | |||||| || |||||||||||||| ||||||||||||||  | |||||| | ||||||||| | |||| |    | ||    ||| |          | | ||  |   ||  || | |||      ||   ||| ||      |||||
CAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTCGgtaag-atttatttacttatctatttatttattttcaattccctggtgaggtatactaatatt------gatgttatgcatgtgcatgcag

upper sequence: Vv18s0157g00190.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G36570.1 (Glycine max), 5'ss of exon 7
TAACCAACCAAGTGACAGTGAAGTTGAAAAATTAGCCTGTGATGCAGAGAAGTACACTCTTGCAAATCATCTATTTTGGGGCATATGGGGAATAATTTCGgtatgcatttctgggttcattcgcttactatc-aactgtattcatgcgggtataatctgagatttcacctgaatctatcactgatttgcag
 ||  |||||||  |   | ||||  |  | ||||     | |||||| || |||||||||||||| ||||||||||||||  | |||||| | ||||||||| |  ||| |   || |||  |  | |  |    | || | |        ||  || | |||  |      |  ||  | |        
CAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGTGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGTTTGTGGGGACTTATTTCGgtaag-gtttatttatttattttccaattccctggttatactaagcataaggtatactaatattgtatgcatgtacat-gcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22011195|gb|BQ796229.1|BQ796229
EST:     AGTACACTCTTGCAAATCATCTATTTTGGGGCATATGGGGAATAATTTCG                         GGTCATGTAAACACGATTGAATTCAACTACATGGAGTATGCAAGGCAGAGG
genomic: AGTACACTCTTGCAAATCATCTATTTTGGGGCATATGGGGAATAATTTCGgtatgcattt ... tgatttgcagGGTCATGTAAACACGATTGAATTCAACTACATGGAGTATGCAAGGCAGAGG