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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACTGCTCCTTTTAGTGAGCCTGAGACTCAAATAATGCGGAAACTCTCCATATCATTTGATCCACATATATGGGTTAATGTGCACTCTGGAATGGAGgtaaatcatgctaattttcctgttagtgtcccatgttgctgtttgcagtgttgatttttgactttaaggtcctatattattagccctgttcagtctctgc...

Basic information

species Vitis vinifera
transcript Vv18s0122g01410.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g02710.3 (Oryza sativa), 5'ss of exon 7
TGGAACTGCTCCTTTTAGTGAGCCTGAGACTCAAATAATGCGGAAACTCTCCATATCATTTGATCCACATATATGGGTTAATGTGCACTCTGGAATGGAGgtaaatcatgctaattttcctgttagtgtcccatgttgctgtttgcagtgttgatttttgactttaaggtcctatattattagccctgttcagtctctgc-
||| |||||||||||||| || |||||| |||| || |||||  | || ||||  |||||| | |||||||| ||||| |||||||| || |||||||||||||  || |||| | |   |  | || | |||| ||  |   || | |   ||   |||    ||  |     ||     |      |      |     
TGGCACTGCTCCTTTTAGCGAACCTGAGGCTCAGATCATGCGAGAGCTATCCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAGgtaagacaggctattgtgttttgttgttttccatattcat-catgtaatagagaccattgttcgtagtgcatcttagccacaataagatagcactttgatc

upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G02070.1 (Glycine max), 5'ss of exon 6
TGGAACTGCTCCTTTTAGTGAGCCTGAGACTCAAATAATGCGGAAACTCTCCATATCATTTGATCCACATATATGGGTTAATGTGCACTCTGGAATGGAGgtaaatcatgctaattttcctgttagtgtcccatgttgctgtttgcagtgttgatttttgactttaaggtcctatattattagccctgttcagtctctgc--
||||| |||||| || ||||||||||| | |||||| |||||||||||  ||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||| |   | | ||||| |   | || ||  |  |      |    |  |      |||  |||    ||| | |||  |       |||||  | |||  
TGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGgtaagtttagttcatttttcacct-gtttctaaaataaaaaatgattgattgttcccttggatttcgtatcc-acatttgtgctttaattcaggatttgcac

upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G01970.1 (Glycine max), 5'ss of exon 1
TGGAACTGCTCCTTTTAGTGAGCCTGAGACTCAAATAATGCGGAAACTCTCCATATCATTTGATCCACATATATGGGTTAATGTGCACTCTGGAATGGAGgtaaatcatgctaattttcctgttagtgtcccatgttgc--tgtttgcagtgttgatttttgactttaaggtcctatattattagccctgttcagtctctgc
||||| |||||| || ||||||||||| | |||||| |||||||||||  ||||||| ||||| ||  || ||||||| || |||||||||||||||||||||| |   | | ||||| |   | || ||  |  |     || ||| | ||      |||  |   |        || |    |   ||  || | | |  
TGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGgtaagtttagttcatttttcacct-gtttctaaaatcaaaatgattg-attgcccccctttatccacatctgtgcttaattcaggatttgcacattatatag

upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G42320.1 (Arabidopsis thaliana), 5'ss of exon 7
TGGAACTGCTCCTTTTAGTGAGCCTGAGACTCAAATAATGCGGAAACTCTCCATATCATTTGATCCACATATATGGGTTAATGTGCACTCTGGAATGGAGgtaaatcatgctaattttcctgttagtgtcccatgt---tgctgtttgcagtgttgatttttgactttaaggtcctatattattagccctgttcagtctctgc
 ||||||||||| ||||||||||| || ||||||||||||||||| ||  |||||||||||||||| || |||||| | |||||||| ||||||||||||||||    |      |    |  || | ||   | |   | |  | |   |  |  |  ||| |  ||  | |    ||| | ||  | |||  |   |    
AGGAACTGCTCCGTTTAGTGAGCCCGAAACTCAAATAATGCGGAAGCTAGCCATATCATTTGATCCTCACATATGGATAAATGTGCATTCTGGAATGGAGgtaatgtttctcttctgctttagtattatcatgtatacatacaatgttgggaatacagctttaaacttctgttggagtatgagtaaacatgtgaatagtg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110419420|gb|EC985642.1|EC985642
EST:     CCATATCATTTGATCCACATATATGGGTTAATGTGCACTCTGGAATGGAG                         GCTCTATTCATGCCATATGACCACAGAAACACAACCCCTGATGGATTGCCT
genomic: CCATATCATTTGATCCACATATATGGGTTAATGTGCACTCTGGAATGGAGgtaaatcatg ... gttttttcagGCTCTATTCATGCCATATGACCACAGAAACACAACCCCTGATGGATTGCCT