1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaagtgattgatattgaagtttttaaattaccattttgacctgtgaatttaaattgaaaaatgtttttacttgccttgcag
species | Vitis vinifera |
transcript | Vv18s0122g01190.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|351049301|gb|FQ429044.1|FQ429044
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCTCTCCGAGGTGAATGATCAGGAGGATGACGA-GAATGGCAGTGAAGAG GAGGAAGATGATGGGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCACATGEST: gi|71872246|gb|DT021301.1|DT021301
genomic: CCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGA-TGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71866454|gb|DT015509.1|DT015509
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCCCTC-GAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71870392|gb|DT019447.1|DT019447
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|18458654|gb|BM436932.1|BM436932
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71871903|gb|DT020958.1|DT020958
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|110422203|gb|EC988518.1|EC988518
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|349812463|gb|FQ407082.1|FQ407082
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAAAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|77587638|gb|DV222996.1|DV222996
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|349812462|gb|FQ407081.1|FQ407081
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCACGAGGATGACTAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|349808030|gb|FQ402421.1|FQ402421
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71870289|gb|DT019344.1|DT019344
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAC GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71875149|gb|DT024204.1|DT024204
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71872390|gb|DT021445.1|DT021445
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|30321835|gb|CD005097.1|CD005097
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|110378901|gb|EC944058.1|EC944058
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|30136340|gb|CB921678.1|CB921678
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAAAC GAGGAAGATGATGAGTAANATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71870838|gb|DT019893.1|DT019893
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|37188038|gb|CF607389.1|CF607389
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGEST: gi|110701263|gb|EE078641.1|EE078641
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAAATGEST: gi|110359145|gb|EC920159.1|EC920159
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71877377|gb|DT026432.1|DT026432
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|110727673|gb|EE104704.1|EE104704
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|27586818|gb|CB009513.1|CB009513
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|30125574|gb|CB910913.1|CB910913
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71872295|gb|DT021350.1|DT021350
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71877289|gb|DT026344.1|DT026344
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|77584467|gb|DV221302.1|DV221302
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71867293|gb|DT016348.1|DT016348
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71879402|gb|DT028457.1|DT028457
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|349812002|gb|FQ410799.1|FQ410799
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCANGAGGATGACGAAGATGGCGGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|30135991|gb|CB921329.1|CB921329
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|71873912|gb|DT022967.1|DT022967
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|110688346|gb|EE066794.1|EE066794
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGTAGTGTGCGTGCAGATGEST: gi|349822310|gb|FQ412574.1|FQ412574
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGAAGEST: gi|110725319|gb|EE101688.1|EE101688
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGTAGTGTGCGTGCAGATGEST: gi|77579649|gb|DV218677.1|DV218677
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGEST: gi|30125704|gb|CB911043.1|CB911043
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaagtgattgatattgaagtttttaaattaccattttgacctgtgaatttaaattgaaaaatgtttttacttgccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA