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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGCCCAAATCAGAATCCTAAGAATTCATCATCGGCTTTTCCTAATCTGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaaccaacaacttccgacaaataagtaaacatcatttaaggggggtgacattggatggtttgctgatttctcaaccatttttaaataattgacaattgagaaagcaacttatgttttgcag

Basic information

species Vitis vinifera
transcript Vv18s0122g00550.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34542681|gb|CF510913.1|CF510913
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|351055531|gb|FQ442327.1|FQ442327
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AACATGTTGAAGTATGACCCTTCATAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|110364533|gb|EC927857.1|EC927857
EST:     GGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: GGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|110365343|gb|EC928182.1|EC928182
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|110376059|gb|EC941099.1|EC941099
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|351039035|gb|FQ457710.1|FQ457710
EST:     TGTCAGCAGCTGTTCCTAAACTGGATGAAGACGAGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTCCAGAGAGGATTTCGGCCAAGAAAGC
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGC
EST: gi|110381644|gb|EC935009.1|EC935009
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|349827747|gb|FQ422615.1|FQ422615
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|34415970|gb|CF414724.1|CF414724
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|71870629|gb|DT019684.1|DT019684
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|33404794|gb|CF210421.1|CF210421
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
EST: gi|34542594|gb|CF510826.1|CF510826
EST:     TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCG                         AAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG
genomic: TGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaac ... tgttttgcagAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGAGCCCAAATCAGAATCCTAAGAATTCATCATCGGCTTTTCCTAATCTGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGgtaagctaaccaacaacttccgacaaataagtaaacatcatttaaggggggtgacattggatggtttgctgatttctcaaccatttttaaataattgacaattgagaaagcaacttatgttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA