Sequence
atgc intronic sequence ATGC exonic sequenceGAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacgtgttgtctcattgcaatgatctttgtatctataatggatggttccaaacaaattcatgatcagggccataatgggttcaattgatcag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g42950.3 (Oryza sativa), 5'ss of exon 7
GAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacgtgttgtctc--attgcaatgatctttgtatctataatggatggttccaaacaaattcatgatcagggccataatgggttcaattgatcag
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GAGAGAGACAATATGCAGAAGACGGAGTTTCTGAAGGCATTATCGGATATGTGGAAGGACTTCGATTCCCGAGTTCTTCGGTATAAAgtatgagcaatccattatctccacttttcatatcaagtgtggtcttatgaaattatggcca-cattttcttggtttgtgtgctgcttcatagaagatgtta-
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 7
GAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacgtgttgtctcattgcaatgatctttgtatctataatggatggttccaaacaaattc-atgatcagggccataatgggt-tcaattgatcag
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GAGAGAGATAATATGCAGAAGACAGAGTTTTTGAAGGCATTATCAGATATGTGGAAGGATTTTGATTCCCGAGTTCTTCGATATAAAgtatgttcagtactgcaatccatccttgtcttcttccgaccaatgctacccccatgtgtccactctctgtgagcatcattttgttatgtaccacttcatt--
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 7
GAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacg-tgttgtctcattgcaatgatct--ttgtatctataatggatggttccaaacaaattcatgatcagggc---cataatgggttcaattgatcag
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GAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAGgtatgctctatgctgtttggttatgaaatttatgtgttttcacttctgctagtcaattttatgtcaggtctttctcccagcatacataatttgtacactc------
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 7
GAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacgtgttgtctcattgcaat---gatctttgtatctataatggatggttccaaacaaattcatgatcagggccataatgggttcaattgatcag
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GAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCACGTGTATTGCGATACAAGgtatgctctatgctgtttggctatgaaatttatgtgttttcacttctgctagtgaattttgtgtcacgtctctctcccagcatacataatttgtattctc---
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 7
GAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacgtgttgtctcattgcaatgatctttgtatctat-----aatggat-ggtt--ccaaacaaatt-catgatcagggc----cataatgggttcaattgatcag
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GAGAGAGACAACATGCAGAAGTCTGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGACTTTGATTCTCGTGTATTACGGTATAAGgt---agtcactttctggattcttttgcgtattctgttacttaacagaaaacaaatcagttactcaagtgatttgcctagtaacaactaatcaaaccaggttttgtcaagcag
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 7
GAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacgt-gttgtctcattgcaatgatctttgtatctataatggatggtt--ccaaacaa---attcatgatcag--ggccataatgggttcaattgatcag
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GAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAGgt---agtcactttactgacttatcttgt--gtcttgataaaaaaaaagatttgatgctcaaatgatatgtctagcaacaactaagcaaaccatgttttatcatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29782673|gb|CB348188.2|CB348188EST: ATTATCAGATATGTGG-AAGAATTTTGACTCTCGTGTTTTGCGTTATAAG GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATG
genomic: ATTATCGGATATGTGGAAAG-ATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaacca ... tttcatgtagGTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacgtgttgtctcattgcaatgatctttgtatctataatggatggttccaaacaaattcatgatcagggccataatgggttcaattgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa