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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGATACATTCAACACAGCGGTTGTTTCTCCAATATATTATGCTCTGTTCACATCATTCACAATTTTGGCCAGTGCCATAATGTTCAAGgtacttccatgttcaatatattgaaatgcttcttccttttctgttttaaactgtaacatacttctctgttattttag

Basic information

species Vitis vinifera
transcript Vv18s0086g00190.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0086g00190.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g65310.1 (Oryza sativa), 5'ss of exon 7
GCTTTGGATACATTCAACACAGCGGTTGTTTCTCCAATATATTATGCTCTGTTCACATCATTCACAATTTTGGCCAGTGCCATAATGTTCAAGgt---acttccatgttcaatatattgaaatgcttcttccttttctgttttaaactgtaacatacttctct----gttattttag----------------
||  ||||||| |||||  |||| |||||||| || || ||||||||  |||||||| |  |||| ||||| || ||||| ||||||||||||||   | |    | |  || ||||  | |  ||     |  ||| || || ||||||    |  |   ||    || | ||  |                
GCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGTTCACAACCCTCACTATTTTAGCAAGTGCGATAATGTTCAAGgtgagaatcttttttagaacatatatacacactatgctccattccgtgttgaactgttgattggtcggctaagggtaacttctgttctatttttactcag

upper sequence: Vv18s0086g00190.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g35570.1 (Oryza sativa), 5'ss of exon 7
GCTTTGGATACATTCAACACAGCGGTTGTTTCTCCAATATATTATGCTCTGTTCACATCATTCACAATTTTGGCCAGTGCCATAATGTTCAAGgtacttccatgttcaatatattg---aaatgcttcttccttttctgttttaaactgtaacatacttctctg---ttattttag---------
||  |||| || ||||| || || ||||| || || || ||||||||  |||| |||||  |||| ||||| || |||||||||||||||||||||      | || | ||  ||    ||||||   ||  |||       |  |||  |||| |  | |  |    | |||||          
GCACTGGACACTTTCAATACCGCAGTTGTGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGgtatgcaggt-tttagtaagttccacaaatgccagttagtttaagtccatttactagaacaaaaatttgagaatatgttttatggtttccag

upper sequence: Vv18s0086g00190.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G097421_T01 (Zea mays), 5'ss of exon 7
GCTTTGGATACATTCAACACAGCGGTTGTTTCTCCAATATATTATGCTCTGTTCACATCATTCACAATTTTGGCCAGTGCCATAATGTTCAAGgtacttccatgttc-aatatattgaaatgcttcttccttttctgttttaaactgtaacatactt----ctctgttattttag------------
|| |||||||| ||||| || || ||||||||||| || || |||||  |||| |||||  ||||||||||||| ||||||||||||||||||||| |   || ||  || |  |  | |  || |  |  ||| |||||    ||| | |  |  |     | ||| |||  |             
GCATTGGATACTTTCAATACTGCAGTTGTTTCTCCCATCTACTATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaattttggaaaacttccataaactccaactatttttgtttcttgctgaagctgaactaaggttttgtgattacaaatttacaactag

upper sequence: Vv18s0086g00190.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G097421_T02 (Zea mays), 5'ss of exon 1
-------GCTTTGGATACATTCAACACAGCGGTTGTTTCTCCAATATATTATGCTCTGTTCACATCATTCACAATTTTGGCCAGTGCCATAATGTTCAAGgtacttccatgttc-aatatattgaaatgcttcttccttttctgttttaaactgtaacatactt----ctctgttattttag------------
       || |||||||| ||||| || || ||||||||||| || || |||||  |||| |||||  ||||||||||||| ||||||||||||||||||||| |   || ||  || |  |  | |  || |  |  ||| |||||    ||| | |  |  |     | ||| |||  |             
CTTTCAGGCATTGGATACTTTCAATACTGCAGTTGTTTCTCCCATCTACTATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaattttggaaaacttccataaactccaactatttttgtttcttgctgaagctgaactaaggttttgtgattacaaatttacaactag