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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagcatttaaaatatcgcttctgctttaaagtgctaatatccaaattcttacttatgatttttccattttag

Basic information

species Vitis vinifera
transcript Vv18s0076g00310.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g51500.1 (Oryza sativa), 5'ss of exon 6
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagca---------tttaaaatatcgcttctgctttaaagtgctaatatccaaattcttacttatgatttttccattttag-----
||| ||||||||||| || || ||||| || ||  |||||||||||||||| || ||| | || |||||||| ||||| |||||||| ||||| ||||||| |||           |||| ||   |  || | |   |||       |||  || ||    | |    || ||| || ||       
GGAAGTCAAGGTTGTTGAAGGTCATGGTACTACAGTTGATGTTGTGTTGGTCAACGGTATACTCCATGAAGGAGATCAAATAGTTGTGTGTGGGATGCAGgtaagagacgtttttctttataaatgcagtttttcaacaaacacagcttattgaagttgccgcctgctcttgttctatgtttatgtag

upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G023418_T01 (Zea mays), 5'ss of exon 5
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagcatttaaaatatcgcttctgctttaaagtgctaatat-----ccaaattct----tacttatgatttttccattttag-----
||| ||||||||||| || |||||||| || || ||||||||||| ||||| |||||| | || |||||||| ||||| |||||||||||||||||||||| |    ||    || |   ||    ||| ||||||||| ||     |  || |      | | ||   || ||   ||||       
GGAAGTCAAGGTTGTTGAAGGCCATGGTACTACAATTGATGTTGTTTTGGTCAATGGTATACTCCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGgtagatgtt----attttaatttatatttgaagtgctaaaattggagcagaacttcaagatgcctaatgttcttgtgtttttacatag

upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G30590.1 (Glycine max), 5'ss of exon 6
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagcat-ttaaaatatcgcttctgctttaaagtgctaatatccaaattcttacttatgatttttccattttag
 ||||| ||||| || || |||||||| || || ||||||||||| || ||||||||||| ||||||||||| || || |||||||| || || ||||||| |||||| ||||| | || || |  | |  |   |    |     | |||   || ||||  |||  ||| |||
AGAGGTGAAGGTAGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGgtaagcatcttaaactctcactgcatcatctattagtacctgatagagttcagcctaatgaaatttt-attgtag

upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G37020.1 (Glycine max), 5'ss of exon 7
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagcat-ttaaaatatcgcttctgctttaaagt---gctaatatccaaattcttactta------tgatttttccattttag
 ||||| ||||| || || |||||||| || || ||||||||||| || ||||||||||| ||||||||||| || || |||||||| || || ||||||| |||||| || || | || ||    | | ||| |     || ||||  |  |||   | |      |||  |||  | | |||
AGAGGTGAAGGTAGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGgtaagcatctttaactctcactgtatcatgaaatttttattagtatctgatctctagttcagcctaatgaaatttttaatatag

upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G76720.1 (Arabidopsis thaliana), 5'ss of exon 10
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagcatttaaaatatcgcttctgct--ttaaagtgctaa-tatcca-aattctta----------cttatgatttttc-cattttag
 |||||||| ||| | || |||||||||||||| ||||||||||||||||| || ||||  || |||||||| ||||| || || ||||||||  | |||||||| |   ||| ||  | | |       ||| |  ||   ||| || |   ||||          |||||  ||  ||  |||| ||
TGAGGTCAAAGTTATTGAAGGCCATGGGACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGTGATCAAATCGTCGTTTGTGGGCTACAGgcaagtaaaaaaactaatgatccaaacaagtaacgcactgggtatacatagaacttagaaaagtgagcttattcttcctcatatttcag

upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G76820.1 (Arabidopsis thaliana), 5'ss of exon 7
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagcatttaaaatatcgcttctgct--ttaaagtgctaa-tatcca-aattctta----------cttatgatttttc-cattttag
 |||||||| ||| | || |||||||| ||||| ||||||||||||||||| || ||||  || |||||||| ||||| || || ||||||||  | |||||||| |   ||| ||  | | |       ||| |  ||   ||| || |   ||||          |||||  ||  ||  |||| ||
TGAGGTCAAAGTTATTGAAGGCCATGGTACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGTGATCAAATCGTCGTTTGTGGGCTACAGgcaagtaaaaaaactaatgatccaaacaagtaacgcactgggtatacatagaacttagaaaagtgagcttattcttcctcatatttcag

upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 7
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagcatttaaaatatcgcttctgctttaaagtgctaatatccaaattcttacttatgatttttccattttag------------------------
 |||||||| ||| | || |||||||| ||||| ||||||||||||||||| || ||||  || |||||||| ||||| || || ||||||||  | |||||||| |   ||  ||| | | | |     ||    | ||  |         || ||  | ||||| |  | |                         
TGAGGTCAAAGTTATTGAAGGCCATGGTACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGTGATCAAATCGTCGTTTGTGGGCTACAGgcaagtaaaaaacttat-gatccagacccgaacaagtgatggcactgggtagacatagaacttttctaagtgatcatattttcttcctcatatttcag

upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G27700.2 (Arabidopsis thaliana), 5'ss of exon 5
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagca----tttaaaatatcgcttctgctttaaagtgc------taatatccaaattcttacttatgat---------ttttccattttag
 |||||||| ||| | || ||| |||| ||||| ||||||||||||||||| |||||||  || |||||||| | ||| || || ||||||||  | |||||||| |     |||  ||      ||   |    | |||      |||||   | |   | | | |||||         | ||  |||||||
AGAGGTCAAAGTTATGGAAGGCTATGGTACAACGATTGATGTTGTGTTGGTAAATGGTGAACTCCATGAAGGTGGTCAAATCGTCGTTTGTGGTCTACAGgcaagtaaaaacttattatccaaactcaaataagtaatgcattggataatacttagaacttaaataatgatcttatatcttcttatattttag