1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATGgtattcaatttatattgtcattcttaaacagtacaagaaattactcaatgctacaatttccgcattttctgacattaaaatgtatgttgatgacttttct...
species | Vitis vinifera |
transcript | Vv18s0072g00880.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATG GATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGGEST: gi|110362082|gb|EC925589.1|EC925589
genomic: CTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATGgtattcaatt ... aaatgtgcagGATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGG
EST: CTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATG GATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGGEST: gi|110361980|gb|EC925486.1|EC925486
genomic: CTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATGgtattcaatt ... aaatgtgcagGATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGG
EST: CTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATG GATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGGEST: gi|110384268|gb|EC948694.1|EC948694
genomic: CTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATGgtattcaatt ... aaatgtgcagGATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGG
EST: CTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATG GATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGG
genomic: CTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATGgtattcaatt ... aaatgtgcagGATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATGgtattcaatttatattgtcattcttaaacagtacaagaaattactcaatgctacaatttccgcattttctgacattaaaatgtatgttgatgacttttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa