Sequence
atgc intronic sequence ATGC exonic sequenceTGACTGAAGAAGTTGATGAGCTAGTCAAGCTTTCTATGACCAAACCAATGCGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAgtaattctaattgaccttgcacatttactagtgactcagacttgttttagcaatattcattacgttgtaatttacttttgtcttaaatatgcacattaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os12g29660.1 (Oryza sativa), 5'ss of exon 7
TGACTGAAGAAGTTGATGAGCTAGTCAAGCTTTCTATGACCAAACCAATGCGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAgtaattctaattgaccttgcacatttactagtgactcagacttgttttagcaatattcattacgttgtaatttacttttgtcttaa--atatgcacattaat--
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TGACAGAAGAaattaatgagcttgtgacactttcactgaacaaaccagtccgtcttgaagctgatccttctctgaaacggcctgcaacattgacagaagagtacaccttttttcctaagt-------ctaaacattgagg-ttatgtgtgctgtattccatgactaacaacatctccatttcctaattatttgctcatcatcag
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 7
TGACTGAAGAAGTTGATGAGCTAGTCAAGCTTTCTATGACCAAACCAATGCGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAgtaattctaattgaccttgcacatttacta-gtgactcagacttgttttagcaatattcattacgttgtaatttacttttgtcttaaatatgcacattaat-
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TGACTGAGGAggttgatgaacttattaaactttccctgtcaaagcccttgcgtctttctgctgatccatctacaaaacggccagcaaccttgactgaggagtaatttct-ttactatttcactttccctttatattttctaatttcatcactcatttccattg-atattagctgtatgtcatatgatagtgataaaatcaca
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 7
TGACTGAAGAAGTTGATGAGCTAGTCAAGCTTTCTATGACCAAACCAATGCGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAgtaattctaattgaccttgcacatttactagtgactcagacttgttttagcaatattcattacgttgtaatttacttt-tgtctta-aatatgcacattaat---
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TGACTGAGGAggttgacgaacttattaaactttccctgtcaaagcccttgcgtctttctgctgacccatctacaaaacggccagcaaccttgactgaggagtaatttc--tttactatttctgtttccctataaatttt-ctgatttcatcactcat--ttccattggtattagctgtatgtcatacgatagtgataaaatcacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719083|gb|FC069336.1|FC069336EST: CGCCTTGCTGCTGATCCATCCACGAAACGGCCATCAACATTGACAGAAGA GGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCT
genomic: CGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAgtaattctaa ... tctattgtagGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACTGAAGAAGTTGATGAGCTAGTCAAGCTTTCTATGACCAAACCAATGCGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAgtaattctaattgaccttgcacatttactagtgactcagacttgttttagcaatattcattacgttgtaatttacttttgtcttaaatatgcacattaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT