Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGAGGATGTATGGAATGAACCACTCGGACGTGGAACTGAGATCAGATTGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAGgtatgcatatttaagtctttgattggtaaatgaattttggttgtatcacgcttgatcctcgatgctttggcatacattttctgcgctggttttttatgat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G141931_T01 (Zea mays), 5'ss of exon 7
TTCTGAGGATGTATGGAATGAACCACTCGGACGTGGAACTGAGATCAGATTGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAGgtatgcatat-ttaagtctttgattggtaaatgaattttggttgtatcacgcttgatcctcgatgctttggcatacattttctgcgctggttttttatgat
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CTCTGAGGATACATGGAATGAGCCCCTTGGCCGTGGAACTGAGATAAGATTGCATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTAAAGgtatcaatacattcacttgtattttatttgggttaattggtttctgcaaaatacaataggcactgatgtagtttttagctgttaacttgaagtccaacag-
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G40320.4 (Glycine max), 5'ss of exon 7
TTCTGAGGATGTATGGAATGAACCACTCGGACGTGGAACTGAGATCAGATTGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAGgtatgcat--atttaagtctttgattggtaaatgaat-tttggttgtatcacgcttgatcctcgatgctttggcatacattttctgcgctggttttttatgat
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TTCAGAAGATACATGGAATGAACCACTTGGACGAGGAACTGAGATTAGATTACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatcaacctattaccttaattatttataagttattcgagtttaaaatttcctgtcttctagtctccttcacatagtttacacttaggggtcattt---
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 7
-TTCTGAGGATGTATGGAATGAACCACTCGGACGTGGAACTGAGATCAGATTGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAGgtatgcat--atttaagt-ctttgattggtaaatgaattttggttgtatcacgcttgatcctcgatgctttggcatacattt-tctgcgctggttttttatgat
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TTTCAGAAGATACATGGAATGAACCTCTAGGGCGTGGAACTGAGATTAGATTACACCTCAAGGAAGAGGCTGGGGAGTACTTGCAGGAGTCTAAACTGAAagtatgcaccaaattatttaccttaattatta--taagtttttctagtttaaaatttcatgtcttctagtttccttcacataagtatacacttaggggtcgt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30297571|gb|CB974365.1|CB974365EST: TGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAG GAGTTAGTGAAAAGATATTCTGAATTCATCAACTTTCCCATATACCTCTGG
genomic: TGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAGgtatgcatat ... ataattgtagGAGTTAGTGAAAAGATATTCTGAATTCATCAACTTTCCCATATACCTCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGAGGATGTATGGAATGAACCACTCGGACGTGGAACTGAGATCAGATTGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAGgtatgcatatttaagtctttgattggtaaatgaattttggttgtatcacgcttgatcctcgatgctttggcatacattttctgcgctggttttttatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa