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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAAAGGGTTGGGTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatcttcttacattttcctggtcttcactcccctttttggtgctagactaccatgtattaaatattttacgtaatgtattttattcttaaaacag

Basic information

species Vitis vinifera
transcript Vv18s0001g14450.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372040|gb|EC936182.1|EC936182
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
EST: gi|32268295|gb|CD717454.1|CD717454
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
EST: gi|351024744|gb|FQ430569.1|FQ430569
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
EST: gi|37187297|gb|CF606650.1|CF606650
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
EST: gi|351042242|gb|FQ442709.1|FQ442709
EST:     GTTGGCTCTTCTTGGGTGTCTCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAA
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAA
EST: gi|351032748|gb|FQ462462.1|FQ462462
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
EST: gi|33404726|gb|CF210353.1|CF210353
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
EST: gi|351053728|gb|FQ441494.1|FQ441494
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAAGAGA
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGA
EST: gi|30325352|gb|CD008614.1|CD008614
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
EST: gi|110379774|gb|EC944993.1|EC944993
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGG
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGG
EST: gi|349826752|gb|FQ418843.1|FQ418843
EST:     GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGAC                         GAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT
genomic: GTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACgtgagatatc ... cttaaaacagGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTAT