1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTAGTCCTGAGGCTGCTCTTGAATTTCTTGCTAAGCACTGCCAATGGGCAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaatgtagctacactgcacttctgttgatatcacgaataaaatgcacattttacttgtatttagatgtggcctgtggagaattagctgcattctggttgttattttgagtaacatatggaatgttacctttttatttcag
species | Vitis vinifera |
transcript | Vv18s0001g12750.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|110717578|gb|EE093555.1|EE093555
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|30129522|gb|CB914861.1|CB914861
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: AAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|110697937|gb|EE075379.1|EE075379
genomic: AAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|45770865|gb|CN006717.1|CN006717
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|30304551|gb|CB981345.1|CB981345
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|46918792|gb|CN548121.1|CN548121
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|110697939|gb|EE075381.1|EE075381
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|33401764|gb|CF207391.1|CF207391
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGTGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|33401843|gb|CF207470.1|CF207470
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGTGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|45368254|gb|CK906613.1|CK906613
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGTGGAAGAGAG ATGCTCCGAGTCGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|352769558|gb|FQ468486.1|FQ468486
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|110732830|gb|EE108461.1|EE108461
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|110697936|gb|EE075378.1|EE075378
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|30125766|gb|CB911105.1|CB911105
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|352769709|gb|FQ468637.1|FQ468637
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|32459727|gb|CD800901.1|CD800901
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: GTGGTGACGCTAGGTTCTAATGGTTGCCCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGAEST: gi|110429129|gb|EC995617.1|EC995617
genomic: GTGGTGACGCTAGGTTCTAATGGTTG--CCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
EST: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAG ATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
genomic: CAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaa ... tttatttcagATGGTCCGAGTTGCAGCCATAGGGGAGGCAAAGGCAACTGATGCCACTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTAGTCCTGAGGCTGCTCTTGAATTTCTTGCTAAGCACTGCCAATGGGCAGTGGTGACGCTAGGTTCTAATGGTTGCCTTGCAAAATGCGGAAGAGAGgttagtgcaatgtagctacactgcacttctgttgatatcacgaataaaatgcacattttacttgtatttagatgtggcctgtggagaattagctgcattctggttgttattttgagtaacatatggaatgttacctttttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA