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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCATCCATCGTGCAAATTTGGGgtctgtgtatcttctctatatgcattatttcagattattattactcaaatcacattttcattgtggtcctgtttttatataagagatagcctgttaacttttatgctttggaatgtag

Basic information

species Vitis vinifera
transcript Vv18s0001g08180.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g51540.1 (Oryza sativa), 5'ss of exon 7
TGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAAC-CATCCATCGTGCAAATTTGGGgtctgtgtatcttctctatatgcattatttcagattattattactcaaatcacattttcattgtggtcctgtttttatataagagat----agcctgttaacttttatgctttggaatgtag
  ||||||||  ||||||| |||||||||||||||||| | |||||||||||||| ||||||  | | ||  | ||||| |      | |  | | | |  ||| |||   |||  ||   |  |   | |  | |  |||  |  ||||     || | |   |  |  |  ||| | | || | ||    ||  | | || | |  || |||  |      
GTCCAGGACCACATGAGATCCAGTATGATGAAGAATGGCTTGCAATAACACGGAAATTCAACAATGTTTTCTCCTTAACTCGGATGCCATTTACAAT-GCTgtcagtg---cttaactgcgtataacgtctttgctcgttagcatgcaaacagagttctgaaaatattttt--tttaaaaaaataaatccagagtttttcaattgtcttgttttacag-----

upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G461145_T01 (Zea mays), 5'ss of exon 8
TGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAAC-CATCCATCGTGCAAATTTGGGgtctgtgtatcttctctatatgcattatttcagattattattactcaaatcacattttcattgtggtcctgtttttatataagagatagcctgttaacttttatgctttggaatgtag
  |||||||| ||||| || |||||||||||||||||| | ||||||||||| || ||||||  | | || |||||| | |   ||  ||  |  | || |||| ||| || |  | | | |   || ||     ||   |  ||  |  |||   ||| |      |   |   ||    || |   ||    | ||||||| |   ||  ||     
ATCCAGGACCATATGAAATCCAGTATGATGAAGAATGGCTTGCAATAACACGAAAATTCAACAGTGTTTTCCCTTTAGCACGGACACAGTTTAC-TATGCGgtcggtgcatataatatctttat-ttgttagcagttg--agcacatagttcatgctttgaaaaaattgtagccattgctaaatatggagatattcaactttttttacttaaaag----

upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G06310.1 (Glycine max), 5'ss of exon 5
-TGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCATCCATCGTGCAAATTTGGGgtctgtgtatcttc---tctatatgcattat--------ttcagattattattactcaaatcacattttcattgt-------ggtcctgtttttatataagagatagcctgttaacttttatgctttggaatgtag
 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||| ||   | |  ||||| | ||  ||| ||||| | |     | |  | |||   |        || ||  | | | |  |||||| | || ||  ||||         |||| ||    |  ||   |||     | |   | |||||  | |     ||
ATGC-AGGACCTTATGAGATTCAGTATGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCCTATATTCCCTTTGACTTACAAAGGTGCAGACTTCAGgtgtgtgtgtgtgtgcatgtgaaagcaccttaattaacatttaggatttgaattgtcaaataaaatcttttttgtccttcccattcctcttccccttcaaataataata-ataatgctatatgcacttgctgacag

upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G06360.1 (Glycine max), 5'ss of exon 7
-TGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCATCCATCGTGCAAATTTGGGgtctgtgtat-cttctctatatgcattatttcagatt----att--attactcaaatcacattttcattgtggtcctgttt----ttatataagagatagcc-tgttaac-ttttatgctttggaatgtag
 ||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||  ||| || ||||| ||   | |  ||||| | ||  ||| ||| ||| | | |  |    | ||| || | |||    |||  | |  |||||| | || ||  ||||  | |  |||    ||       | |||    |  |||   | |||||  | |     ||
ATGC-AGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTTACAAAGGTGCAGACTTCAGgtgtgtatatgcatgtgaaagcaccttaattaacatttaggatttgagttgtcaaataaaatcttttttgtccttccctttcctcttccccttcaaataataataataatgctatatgcacttgctgacag