Sequence
atgc intronic sequence ATGC exonic sequenceGGAGCTGAGAATAGCATGTACTGTAGCACAAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAGgtgggtactttgctgcaaaattcctctctattatcattaaattgtgacttgaaaggtcagtcattatatagttttcaagcagtagtttcttatgcatgca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G37130.2 (Glycine max), 5'ss of exon 7
GGAGCTGAGAATAGCATGTACTGTAGCACAAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAGgtgggtactttgctgcaaaattcctctctatta--tcattaaattgtgacttgaaaggtcagtcat-tatatagttttcaagcagtagtttcttatgcatgca---
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GGAGCTCAGAATAGCTTGTACGTTGGCACAAATGGAGCGTGAAGGAGGGATCAGTCCCCGAGTATCACCTTTGGCACAGgcatgt----tattgcaaaagtattatctcctgatttgtttatttatcagtt--aagatcaactatattttgaattaatactttactgtctcttttgaataggatg
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G43650.1 (Glycine max), 5'ss of exon 6
GGAGCTGAGAATAGCATGTACTGTAGCACAAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAGgtgggtactttgctgcaaaattcctctctatta--tcattaaattgtgacttgaaaggtcagtcat-tatatagttttcaagcagtagtttcttatgcatgca---
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GGAGCTCAGAATAGCTTGTACGTTGGCACAAATGGAGCGTGAAGGAGGGATCAGTCCCCGAGTATCACCTTTGGCACAGgcatgt----tattgcaaaattattatctcctgatttgtttatttatcagtt--aagatcaactatattttgaattaatactttactgtctcttttgaataggatg
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G43530.1 (Glycine max), 5'ss of exon 4
GGAGCTGAGAATAGCATGTACTGTAGCACAAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTAT----CACCATTGGCACAGgtgggtactttgctgcaaaattcctctctattatcattaaattgtgacttgaaaggtcagtcattatatagttttcaagcagta--gtttcttatgcatgca-------------
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GGAGCTCAAAATAGCTTGTACGTTGGCACAAATGGAGCGTGAAGGAGGGATCAGTCCCCGAGTATCTATCACCTTTGGCACAGGCATgt----tattgcaaaagtattatctcctgac------ttgtttattttaagatcaactat-attttgaatgaatgctttactgtctcttttgaataggatgatgtggttat
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 7
GGAGCTGAGAATAGCATGTACTGTAGCACAAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAGgtgggt---actttgctgcaaaattcctctctattatcattaaattgtgacttgaaaggtcagtcattatatagttttcaagcagtagtttcttatgcatgca
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GGAGCTGAGAATAGCATGCACTTTGGCTCACATGGAGCGGGAAGGAGGGATTAGTCCTCGGCTATCACCTTTGGCACAGgtgtgtgtgaatatcttagcaagatcaagttgatttctagta--ctgaggtgaaagaacatggcttctcttttctttttcag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383911|gb|EC948316.1|EC948316EST: AAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAG GTTCGGGATGCAGGCAATCTTTTGACTCGTGCAGGCTTTACGCTTCCTAGT
genomic: AAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAGgtgggtactt ... tgttatttagGTTCGGGATGCGGGCAATCTTTTGACTCGTGCAGGCTTTACGCTTCCTAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGCTGAGAATAGCATGTACTGTAGCACAAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAGgtgggtactttgctgcaaaattcctctctattatcattaaattgtgacttgaaaggtcagtcattatatagttttcaagcagtagtttcttatgcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc